Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02455

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02445 and MMP_RS02450 are separated by 273 nucleotidesMMP_RS02450 and MMP_RS02455 are separated by 12 nucleotidesMMP_RS02455 and MMP_RS02460 are separated by 165 nucleotides MMP_RS02445: MMP_RS02445 - putative DNA binding domain-containing protein, at 456,701 to 458,044 _RS02445 MMP_RS02450: MMP_RS02450 - hypothetical protein, at 458,318 to 458,512 _RS02450 MMP_RS02455: MMP_RS02455 - hypothetical protein, at 458,525 to 459,142 _RS02455 MMP_RS02460: MMP_RS02460 - hypothetical protein, at 459,308 to 462,367 _RS02460 Position (kb) 458 459 460Strain fitness (log2 ratio) -2 -1 0 1at 457.560 kb on - strand, within MMP_RS02445at 457.561 kb on + strand, within MMP_RS02445at 457.564 kb on - strand, within MMP_RS02445at 457.564 kb on - strand, within MMP_RS02445at 457.564 kb on - strand, within MMP_RS02445at 457.564 kb on - strand, within MMP_RS02445at 457.564 kb on - strand, within MMP_RS02445at 457.565 kb on + strand, within MMP_RS02445at 457.565 kb on + strand, within MMP_RS02445at 457.566 kb on - strand, within MMP_RS02445at 457.566 kb on - strand, within MMP_RS02445at 457.566 kb on - strand, within MMP_RS02445at 457.567 kb on + strand, within MMP_RS02445at 457.567 kb on + strand, within MMP_RS02445at 457.605 kb on - strand, within MMP_RS02445at 457.606 kb on + strand, within MMP_RS02445at 457.611 kb on - strand, within MMP_RS02445at 457.611 kb on - strand, within MMP_RS02445at 457.622 kb on - strand, within MMP_RS02445at 457.675 kb on + strand, within MMP_RS02445at 457.716 kb on - strand, within MMP_RS02445at 457.879 kb on + strand, within MMP_RS02445at 457.919 kb on + strandat 457.932 kb on - strandat 457.942 kb on - strandat 457.943 kb on + strandat 457.996 kb on + strandat 457.996 kb on + strandat 458.048 kb on + strandat 458.048 kb on + strandat 458.048 kb on + strandat 458.054 kb on + strandat 458.054 kb on + strandat 458.064 kb on - strandat 458.087 kb on + strandat 458.098 kb on + strandat 458.136 kb on + strandat 458.136 kb on + strandat 458.214 kb on - strandat 458.231 kb on + strandat 458.250 kb on + strandat 458.308 kb on - strandat 458.347 kb on + strand, within MMP_RS02450at 458.361 kb on - strand, within MMP_RS02450at 458.371 kb on - strand, within MMP_RS02450at 458.392 kb on - strand, within MMP_RS02450at 458.392 kb on - strand, within MMP_RS02450at 458.398 kb on + strand, within MMP_RS02450at 458.398 kb on + strand, within MMP_RS02450at 458.403 kb on + strand, within MMP_RS02450at 458.468 kb on + strand, within MMP_RS02450at 458.532 kb on + strandat 458.628 kb on - strand, within MMP_RS02455at 458.629 kb on + strand, within MMP_RS02455at 458.630 kb on - strand, within MMP_RS02455at 458.760 kb on + strand, within MMP_RS02455at 458.783 kb on - strand, within MMP_RS02455at 458.787 kb on - strand, within MMP_RS02455at 458.787 kb on - strand, within MMP_RS02455at 458.960 kb on + strand, within MMP_RS02455at 458.963 kb on - strand, within MMP_RS02455at 458.974 kb on - strand, within MMP_RS02455at 458.974 kb on - strand, within MMP_RS02455at 458.996 kb on + strand, within MMP_RS02455at 459.136 kb on - strandat 459.212 kb on + strandat 459.241 kb on - strandat 459.255 kb on - strandat 459.288 kb on - strandat 459.307 kb on + strandat 459.321 kb on - strandat 459.344 kb on - strandat 459.345 kb on + strandat 459.378 kb on + strandat 459.409 kb on - strandat 459.409 kb on - strandat 459.409 kb on - strandat 459.410 kb on + strandat 459.411 kb on - strandat 459.446 kb on + strandat 459.448 kb on - strandat 459.448 kb on - strandat 459.448 kb on - strandat 459.449 kb on + strandat 459.451 kb on - strandat 459.452 kb on + strandat 459.452 kb on + strandat 459.452 kb on + strandat 459.452 kb on + strandat 459.453 kb on - strandat 459.453 kb on - strandat 459.454 kb on + strandat 459.457 kb on - strandat 459.457 kb on - strandat 459.457 kb on - strandat 459.458 kb on + strandat 459.482 kb on - strandat 459.482 kb on - strandat 459.482 kb on - strandat 459.502 kb on - strandat 459.502 kb on - strandat 459.515 kb on - strandat 459.519 kb on - strandat 459.520 kb on + strandat 459.520 kb on + strandat 459.520 kb on + strandat 459.520 kb on + strandat 459.520 kb on + strandat 459.520 kb on + strandat 459.546 kb on - strandat 459.546 kb on - strandat 459.547 kb on + strandat 459.550 kb on - strandat 459.596 kb on - strandat 459.659 kb on + strand, within MMP_RS02460at 459.662 kb on + strand, within MMP_RS02460at 459.717 kb on + strand, within MMP_RS02460at 459.727 kb on - strand, within MMP_RS02460at 459.739 kb on - strand, within MMP_RS02460at 459.739 kb on - strand, within MMP_RS02460at 459.740 kb on + strand, within MMP_RS02460at 459.740 kb on + strand, within MMP_RS02460at 459.757 kb on - strand, within MMP_RS02460at 459.769 kb on - strand, within MMP_RS02460at 459.770 kb on + strand, within MMP_RS02460at 459.770 kb on + strand, within MMP_RS02460at 459.770 kb on + strand, within MMP_RS02460at 459.833 kb on - strand, within MMP_RS02460at 459.834 kb on + strand, within MMP_RS02460at 459.843 kb on - strand, within MMP_RS02460at 459.855 kb on - strand, within MMP_RS02460at 459.855 kb on - strand, within MMP_RS02460at 459.856 kb on + strand, within MMP_RS02460at 459.856 kb on + strand, within MMP_RS02460at 459.856 kb on + strand, within MMP_RS02460at 459.858 kb on - strand, within MMP_RS02460at 459.858 kb on - strand, within MMP_RS02460at 459.859 kb on + strand, within MMP_RS02460at 459.859 kb on + strand, within MMP_RS02460at 459.860 kb on - strand, within MMP_RS02460at 459.861 kb on + strand, within MMP_RS02460at 459.861 kb on + strand, within MMP_RS02460at 459.863 kb on - strand, within MMP_RS02460at 459.864 kb on + strand, within MMP_RS02460at 459.865 kb on - strand, within MMP_RS02460at 459.865 kb on - strand, within MMP_RS02460at 459.866 kb on + strand, within MMP_RS02460at 459.866 kb on + strand, within MMP_RS02460at 459.866 kb on + strand, within MMP_RS02460at 459.878 kb on - strand, within MMP_RS02460at 459.955 kb on + strand, within MMP_RS02460at 459.980 kb on - strand, within MMP_RS02460at 459.980 kb on - strand, within MMP_RS02460at 459.981 kb on + strand, within MMP_RS02460at 459.981 kb on + strand, within MMP_RS02460at 459.984 kb on - strand, within MMP_RS02460at 460.025 kb on - strand, within MMP_RS02460at 460.083 kb on - strand, within MMP_RS02460at 460.084 kb on + strand, within MMP_RS02460at 460.084 kb on + strand, within MMP_RS02460at 460.084 kb on + strand, within MMP_RS02460at 460.121 kb on + strand, within MMP_RS02460

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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457,560 - MMP_RS02445 0.64 +0.6
457,561 + MMP_RS02445 0.64 -0.1
457,564 - MMP_RS02445 0.64 -0.2
457,564 - MMP_RS02445 0.64 +0.6
457,564 - MMP_RS02445 0.64 +0.2
457,564 - MMP_RS02445 0.64 +0.5
457,564 - MMP_RS02445 0.64 -0.7
457,565 + MMP_RS02445 0.64 -0.4
457,565 + MMP_RS02445 0.64 +0.7
457,566 - MMP_RS02445 0.64 -0.1
457,566 - MMP_RS02445 0.64 +0.1
457,566 - MMP_RS02445 0.64 +1.4
457,567 + MMP_RS02445 0.64 +0.2
457,567 + MMP_RS02445 0.64 +0.6
457,605 - MMP_RS02445 0.67 -0.1
457,606 + MMP_RS02445 0.67 +0.9
457,611 - MMP_RS02445 0.68 -0.6
457,611 - MMP_RS02445 0.68 -0.1
457,622 - MMP_RS02445 0.69 -0.3
457,675 + MMP_RS02445 0.72 +0.8
457,716 - MMP_RS02445 0.76 +0.1
457,879 + MMP_RS02445 0.88 -0.1
457,919 + -0.2
457,932 - +1.7
457,942 - +0.1
457,943 + -0.2
457,996 + -0.1
457,996 + -0.3
458,048 + -0.6
458,048 + -0.3
458,048 + +0.1
458,054 + -0.1
458,054 + +0.2
458,064 - -0.1
458,087 + -0.3
458,098 + +0.1
458,136 + -0.3
458,136 + +0.3
458,214 - +0.1
458,231 + +0.2
458,250 + -0.1
458,308 - -0.7
458,347 + MMP_RS02450 0.15 -0.2
458,361 - MMP_RS02450 0.22 -0.2
458,371 - MMP_RS02450 0.27 -0.2
458,392 - MMP_RS02450 0.38 +0.3
458,392 - MMP_RS02450 0.38 -0.1
458,398 + MMP_RS02450 0.41 +1.4
458,398 + MMP_RS02450 0.41 -1.0
458,403 + MMP_RS02450 0.44 -0.2
458,468 + MMP_RS02450 0.77 -0.3
458,532 + -0.2
458,628 - MMP_RS02455 0.17 -0.5
458,629 + MMP_RS02455 0.17 -0.6
458,630 - MMP_RS02455 0.17 +0.0
458,760 + MMP_RS02455 0.38 -0.0
458,783 - MMP_RS02455 0.42 +0.1
458,787 - MMP_RS02455 0.42 +0.1
458,787 - MMP_RS02455 0.42 -0.1
458,960 + MMP_RS02455 0.70 -0.1
458,963 - MMP_RS02455 0.71 -0.3
458,974 - MMP_RS02455 0.73 +0.1
458,974 - MMP_RS02455 0.73 -0.3
458,996 + MMP_RS02455 0.76 -0.1
459,136 - +0.5
459,212 + -0.1
459,241 - -0.2
459,255 - +0.1
459,288 - -0.4
459,307 + -0.2
459,321 - -0.0
459,344 - -0.3
459,345 + -0.1
459,378 + -0.1
459,409 - +0.6
459,409 - -0.0
459,409 - +0.5
459,410 + -0.4
459,411 - +0.2
459,446 + +1.0
459,448 - +0.7
459,448 - -0.6
459,448 - -0.4
459,449 + +0.0
459,451 - -0.1
459,452 + -0.4
459,452 + +0.5
459,452 + -0.1
459,452 + -0.6
459,453 - -0.2
459,453 - +0.3
459,454 + -0.2
459,457 - -0.6
459,457 - -0.2
459,457 - -0.3
459,458 + -0.3
459,482 - -0.0
459,482 - +1.0
459,482 - +0.2
459,502 - +0.4
459,502 - +1.1
459,515 - -0.2
459,519 - -0.1
459,520 + -0.3
459,520 + +0.4
459,520 + -0.0
459,520 + -2.2
459,520 + -0.4
459,520 + -0.4
459,546 - +0.4
459,546 - +0.6
459,547 + -0.3
459,550 - -0.2
459,596 - -0.7
459,659 + MMP_RS02460 0.11 -0.6
459,662 + MMP_RS02460 0.12 -0.2
459,717 + MMP_RS02460 0.13 +0.6
459,727 - MMP_RS02460 0.14 +0.8
459,739 - MMP_RS02460 0.14 -0.1
459,739 - MMP_RS02460 0.14 +0.1
459,740 + MMP_RS02460 0.14 -0.1
459,740 + MMP_RS02460 0.14 -0.2
459,757 - MMP_RS02460 0.15 +0.9
459,769 - MMP_RS02460 0.15 +0.6
459,770 + MMP_RS02460 0.15 -0.5
459,770 + MMP_RS02460 0.15 -0.3
459,770 + MMP_RS02460 0.15 -0.1
459,833 - MMP_RS02460 0.17 -0.8
459,834 + MMP_RS02460 0.17 -0.0
459,843 - MMP_RS02460 0.17 +0.6
459,855 - MMP_RS02460 0.18 +0.1
459,855 - MMP_RS02460 0.18 -0.2
459,856 + MMP_RS02460 0.18 +0.7
459,856 + MMP_RS02460 0.18 -0.4
459,856 + MMP_RS02460 0.18 -0.7
459,858 - MMP_RS02460 0.18 -0.2
459,858 - MMP_RS02460 0.18 -0.1
459,859 + MMP_RS02460 0.18 -0.6
459,859 + MMP_RS02460 0.18 -0.7
459,860 - MMP_RS02460 0.18 +0.2
459,861 + MMP_RS02460 0.18 -0.3
459,861 + MMP_RS02460 0.18 -0.2
459,863 - MMP_RS02460 0.18 +0.4
459,864 + MMP_RS02460 0.18 +0.9
459,865 - MMP_RS02460 0.18 +0.4
459,865 - MMP_RS02460 0.18 -0.7
459,866 + MMP_RS02460 0.18 +0.2
459,866 + MMP_RS02460 0.18 -0.3
459,866 + MMP_RS02460 0.18 -0.4
459,878 - MMP_RS02460 0.19 -0.7
459,955 + MMP_RS02460 0.21 -0.2
459,980 - MMP_RS02460 0.22 +0.2
459,980 - MMP_RS02460 0.22 -0.0
459,981 + MMP_RS02460 0.22 +0.4
459,981 + MMP_RS02460 0.22 +0.0
459,984 - MMP_RS02460 0.22 -0.4
460,025 - MMP_RS02460 0.23 +0.1
460,083 - MMP_RS02460 0.25 +0.8
460,084 + MMP_RS02460 0.25 -0.2
460,084 + MMP_RS02460 0.25 -0.3
460,084 + MMP_RS02460 0.25 +0.5
460,121 + MMP_RS02460 0.27 +1.3

Or see this region's nucleotide sequence