Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03190

Experiment: PYE with Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0001 mg/ml
3,349,382	-		CCNA_03188	0.50	+0.1
3,349,395	+		CCNA_03188	0.51	-1.6
3,349,410	-		CCNA_03188	0.52	-0.9
3,349,430	-		CCNA_03188	0.54	-0.6
3,349,435	-		CCNA_03188	0.54	-1.0
3,349,453	+		CCNA_03188	0.56	-1.0
3,349,484	+		CCNA_03188	0.59	-0.1
3,349,489	+		CCNA_03188	0.59	-0.0
3,349,489	+		CCNA_03188	0.59	-1.2
3,349,576	+		CCNA_03188	0.67	-0.6
3,349,607	-		CCNA_03188	0.70	-1.7
3,349,625	-		CCNA_03188	0.71	-0.1
3,349,633	-		CCNA_03188	0.72	+0.1
3,349,636	+		CCNA_03188	0.72	+0.2
3,349,673	+		CCNA_03188	0.75	+0.6
3,349,729	-		CCNA_03188	0.80	-0.9
3,349,742	-		CCNA_03188	0.81	-1.3
3,349,814	-		CCNA_03188	0.88	+0.1
3,349,816	+		CCNA_03188	0.88	-0.4
3,349,816	+		CCNA_03188	0.88	-2.6
3,349,824	-		CCNA_03188	0.89	+0.1
3,349,843	+				+0.2
3,349,850	-				-0.4
3,349,888	-				-1.2
3,349,890	-				-0.2
3,349,904	+				+1.0
3,349,905	-				-0.6
3,349,947	+				-1.9
3,349,955	-				-0.1
3,350,068	+		CCNA_03189	0.22	+3.2
3,350,076	-		CCNA_03189	0.24	-1.6
3,350,090	+		CCNA_03189	0.28	+1.0
3,350,090	+		CCNA_03189	0.28	-0.2
3,350,102	-		CCNA_03189	0.31	+0.9
3,350,125	-		CCNA_03189	0.36	-0.8
3,350,136	-		CCNA_03189	0.39	+0.6
3,350,141	-		CCNA_03189	0.40	-1.0
3,350,177	+		CCNA_03189	0.49	+0.0
3,350,214	-		CCNA_03189	0.58	-0.1
3,350,218	+		CCNA_03189	0.59	-1.1
3,350,218	+		CCNA_03189	0.59	-1.6
3,350,218	+		CCNA_03189	0.59	+1.6
3,350,218	+		CCNA_03189	0.59	-1.1
3,350,218	+		CCNA_03189	0.59	+0.8
3,350,218	+		CCNA_03189	0.59	+0.3
3,350,218	+		CCNA_03189	0.59	+2.2
3,350,226	-		CCNA_03189	0.61	-1.2
3,350,226	-		CCNA_03189	0.61	-0.2
3,350,226	-		CCNA_03189	0.61	-0.3
3,350,226	-		CCNA_03189	0.61	-0.5
3,350,226	-		CCNA_03189	0.61	-0.1
3,350,226	-		CCNA_03189	0.61	+0.6
3,350,226	-		CCNA_03189	0.61	+0.6
3,350,226	-		CCNA_03189	0.61	-1.4
3,350,232	-		CCNA_03189	0.63	-0.7
3,350,244	-		CCNA_03189	0.66	+1.3
3,350,267	+		CCNA_03189	0.71	-1.4
3,350,271	+		CCNA_03189	0.72	+0.6
3,350,305	+		CCNA_03189	0.81	+1.2
3,350,318	+		CCNA_03189	0.84	+0.0
3,350,344	-				-0.8
3,350,350	+				+0.2
3,350,437	+				+0.4
3,350,470	+				-1.4
3,350,481	+				+0.6
3,350,489	-		CCNA_03190	0.11	+0.6
3,350,502	+		CCNA_03190	0.12	+0.6
3,350,507	+		CCNA_03190	0.12	-0.4
3,350,536	-		CCNA_03190	0.15	+0.2
3,350,538	+		CCNA_03190	0.15	-0.4
3,350,546	-		CCNA_03190	0.16	+0.1
3,350,546	-		CCNA_03190	0.16	-1.2
3,350,546	-		CCNA_03190	0.16	-0.0
3,350,546	-		CCNA_03190	0.16	-0.2
3,350,558	+		CCNA_03190	0.17	+0.0
3,350,564	+		CCNA_03190	0.18	+0.1
3,350,567	-		CCNA_03190	0.18	-2.0
3,350,593	-		CCNA_03190	0.21	-1.0
3,350,598	+		CCNA_03190	0.21	+0.3
3,350,606	-		CCNA_03190	0.22	-0.5
3,350,626	-		CCNA_03190	0.24	-2.0
3,350,649	+		CCNA_03190	0.26	-0.1
3,350,654	+		CCNA_03190	0.27	+0.8
3,350,657	-		CCNA_03190	0.27	-1.6
3,350,662	-		CCNA_03190	0.27	-0.7
3,350,686	+		CCNA_03190	0.30	-0.8
3,350,686	+		CCNA_03190	0.30	+0.4
3,350,694	-		CCNA_03190	0.30	-1.1
3,350,694	-		CCNA_03190	0.30	-0.4
3,350,756	-		CCNA_03190	0.36	-0.8
3,350,828	+		CCNA_03190	0.43	+0.9
3,350,842	+		CCNA_03190	0.45	+1.2
3,350,861	+		CCNA_03190	0.47	-1.2
3,350,863	-		CCNA_03190	0.47	-0.4
3,350,882	+		CCNA_03190	0.49	+0.4
3,350,884	-		CCNA_03190	0.49	+0.2
3,350,884	-		CCNA_03190	0.49	-2.1
3,350,888	+		CCNA_03190	0.49	-0.3
3,350,888	+		CCNA_03190	0.49	-0.6
3,350,896	-		CCNA_03190	0.50	+1.0
3,350,896	-		CCNA_03190	0.50	-0.4
3,350,896	-		CCNA_03190	0.50	-0.6
3,350,896	-		CCNA_03190	0.50	-0.5
3,350,896	-		CCNA_03190	0.50	-0.7
3,350,896	-		CCNA_03190	0.50	+1.7
3,350,909	-		CCNA_03190	0.51	-1.0
3,350,909	-		CCNA_03190	0.51	+2.0
3,350,909	-		CCNA_03190	0.51	-0.6
3,350,909	-		CCNA_03190	0.51	-1.0
3,350,941	+		CCNA_03190	0.54	-0.8
3,350,969	-		CCNA_03190	0.57	-1.2
3,350,978	-		CCNA_03190	0.58	-1.7
3,350,984	+		CCNA_03190	0.58	-0.8
3,351,035	+		CCNA_03190	0.63	-0.0
3,351,040	+		CCNA_03190	0.64	+1.6
3,351,043	-		CCNA_03190	0.64	-0.8
3,351,115	-		CCNA_03190	0.71	-0.2
3,351,115	-		CCNA_03190	0.71	+1.2
3,351,118	+		CCNA_03190	0.71	-0.1
3,351,146	-		CCNA_03190	0.74	+0.8
3,351,147	+		CCNA_03190	0.74	+0.4
3,351,158	+		CCNA_03190	0.75	-0.2
3,351,166	-		CCNA_03190	0.76	+1.5
3,351,177	+		CCNA_03190	0.77	+0.1
3,351,177	+		CCNA_03190	0.77	-0.3
3,351,182	+		CCNA_03190	0.78	-0.5
3,351,182	+		CCNA_03190	0.78	+1.2
3,351,185	-		CCNA_03190	0.78	+0.0
3,351,203	-		CCNA_03190	0.80	+0.9
3,351,212	+		CCNA_03190	0.80	+0.1
3,351,217	+		CCNA_03190	0.81	-0.3
3,351,248	-		CCNA_03190	0.84	+0.4
3,351,254	-		CCNA_03190	0.85	-0.8
3,351,341	+				+0.4
3,351,356	+				-0.0
3,351,393	+				-0.1
3,351,393	+				+0.3
3,351,393	+				-0.0
3,351,401	-				+0.8
3,351,416	-				+0.5
3,351,424	+				+1.2
3,351,440	-				+0.7
3,351,448	+				-2.1
3,351,456	-				-0.9
3,351,463	-				-0.8
3,351,473	+				+2.2
3,351,486	-				-0.2
3,351,504	-				-0.7
3,351,544	+				-3.3
3,351,551	-				-2.2
3,351,561	+				-1.7
3,351,566	+				-0.4
3,351,573	+				-0.3
3,351,589	-				-0.1
3,351,607	-				+0.5
3,351,617	-				-0.7
3,351,649	+				-0.2
3,351,673	-		CCNA_03191	0.11	-0.1
3,351,691	+		CCNA_03191	0.12	+0.0
3,351,738	-		CCNA_03191	0.14	-0.2
3,351,738	-		CCNA_03191	0.14	+0.6
3,351,740	+		CCNA_03191	0.14	+0.4
3,351,740	+		CCNA_03191	0.14	-1.8
3,351,740	+		CCNA_03191	0.14	-0.6
3,351,740	+		CCNA_03191	0.14	-1.2
3,351,743	-		CCNA_03191	0.14	-0.6
3,351,745	+		CCNA_03191	0.14	-0.2
3,351,748	-		CCNA_03191	0.14	-1.1
3,351,774	-		CCNA_03191	0.15	+0.0
3,351,790	+		CCNA_03191	0.16	-0.4
3,351,798	-		CCNA_03191	0.17	-1.2
3,351,798	-		CCNA_03191	0.17	+0.5
3,351,800	+		CCNA_03191	0.17	-1.2
3,351,800	+		CCNA_03191	0.17	+0.2
3,351,800	+		CCNA_03191	0.17	-0.5
3,351,808	-		CCNA_03191	0.17	-1.2
3,351,851	-		CCNA_03191	0.19	-0.1
3,351,852	-		CCNA_03191	0.19	-1.5
3,351,870	-		CCNA_03191	0.20	-1.1
3,351,890	-		CCNA_03191	0.21	-1.6
3,351,891	+				+1.2
3,351,891	+		CCNA_03191	0.21	-1.6
3,351,898	-		CCNA_03191	0.21	+0.2
3,351,898	-		CCNA_03191	0.21	+0.9
3,351,936	-		CCNA_03191	0.23	-1.8
3,351,960	+		CCNA_03191	0.24	+0.6
3,351,968	-		CCNA_03191	0.24	+0.5
3,351,980	-		CCNA_03191	0.25	-1.3
3,351,980	-		CCNA_03191	0.25	+1.1
3,351,991	+		CCNA_03191	0.25	-2.4
3,352,015	-		CCNA_03191	0.26	-0.2
3,352,020	+		CCNA_03191	0.26	+0.5
3,352,041	-		CCNA_03191	0.27	-0.5
3,352,052	-		CCNA_03191	0.28	-0.4
3,352,076	+		CCNA_03191	0.29	-0.9
3,352,084	-		CCNA_03191	0.29	-0.2
3,352,105	+		CCNA_03191	0.30	-1.8
3,352,113	-		CCNA_03191	0.31	+1.7
3,352,113	-		CCNA_03191	0.31	-0.9
3,352,145	-		CCNA_03191	0.32	+0.2
3,352,149	-		CCNA_03191	0.32	+0.9
3,352,176	+		CCNA_03191	0.33	-0.5
3,352,193	+		CCNA_03191	0.34	+0.9
3,352,195	-		CCNA_03191	0.34	+0.4
3,352,195	-		CCNA_03191	0.34	+0.2
3,352,196	-		CCNA_03191	0.34	-0.6
3,352,201	-		CCNA_03191	0.34	-1.3
3,352,245	+		CCNA_03191	0.36	-0.4
3,352,253	-		CCNA_03191	0.37	+1.3
3,352,254	+		CCNA_03191	0.37	-2.1
3,352,267	-		CCNA_03191	0.37	-0.4
3,352,290	-		CCNA_03191	0.38	+0.9
3,352,292	+		CCNA_03191	0.38	-1.2
3,352,302	+		CCNA_03191	0.39	-0.4
3,352,303	+		CCNA_03191	0.39	-0.7
3,352,310	-		CCNA_03191	0.39	-0.7
3,352,311	-		CCNA_03191	0.39	+0.2
3,352,325	+		CCNA_03191	0.40	-1.1
3,352,333	-		CCNA_03191	0.40	-2.5
3,352,340	+		CCNA_03191	0.41	-0.0
3,352,340	+		CCNA_03191	0.41	+0.9
3,352,340	+		CCNA_03191	0.41	-2.0
3,352,348	-		CCNA_03191	0.41	-1.0
3,352,348	-		CCNA_03191	0.41	-0.7
3,352,348	-		CCNA_03191	0.41	-0.2
3,352,348	-		CCNA_03191	0.41	-0.5
3,352,358	-		CCNA_03191	0.41	-1.4
3,352,368	-				+2.2
3,352,368	-		CCNA_03191	0.42	-0.9
3,352,368	-		CCNA_03191	0.42	-0.7
3,352,393	+		CCNA_03191	0.43	-1.6
3,352,393	+		CCNA_03191	0.43	+0.2
3,352,393	+		CCNA_03191	0.43	+0.2
3,352,393	+		CCNA_03191	0.43	+0.7
3,352,396	-		CCNA_03191	0.43	+1.3
3,352,401	-		CCNA_03191	0.43	+0.1
3,352,401	-		CCNA_03191	0.43	+0.6
3,352,401	-		CCNA_03191	0.43	-0.1