Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00841

Experiment: PYE with Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00840 and CCNA_00841 are separated by 9 nucleotidesCCNA_00841 and CCNA_00842 are separated by 89 nucleotides CCNA_00840: CCNA_00840 - sialic acid-specific 9-O-acetylesterase, at 909,868 to 911,793 _00840 CCNA_00841: CCNA_00841 - carboxylesterase type B, at 911,803 to 913,419 _00841 CCNA_00842: CCNA_00842 - hypothetical protein, at 913,509 to 915,233 _00842 Position (kb) 911 912 913 914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 910.844 kb on + strand, within CCNA_00840at 910.849 kb on + strand, within CCNA_00840at 910.849 kb on + strand, within CCNA_00840at 910.852 kb on - strand, within CCNA_00840at 910.857 kb on - strand, within CCNA_00840at 910.867 kb on + strandat 910.874 kb on - strand, within CCNA_00840at 910.875 kb on - strand, within CCNA_00840at 910.875 kb on - strand, within CCNA_00840at 910.915 kb on + strand, within CCNA_00840at 910.915 kb on + strand, within CCNA_00840at 910.915 kb on + strand, within CCNA_00840at 910.957 kb on + strand, within CCNA_00840at 910.962 kb on + strand, within CCNA_00840at 910.970 kb on - strand, within CCNA_00840at 910.981 kb on + strand, within CCNA_00840at 910.994 kb on - strand, within CCNA_00840at 911.085 kb on - strand, within CCNA_00840at 911.107 kb on + strand, within CCNA_00840at 911.115 kb on - strand, within CCNA_00840at 911.115 kb on - strand, within CCNA_00840at 911.166 kb on + strand, within CCNA_00840at 911.181 kb on - strand, within CCNA_00840at 911.194 kb on + strand, within CCNA_00840at 911.194 kb on + strand, within CCNA_00840at 911.202 kb on - strand, within CCNA_00840at 911.253 kb on - strand, within CCNA_00840at 911.281 kb on + strand, within CCNA_00840at 911.300 kb on - strand, within CCNA_00840at 911.325 kb on + strand, within CCNA_00840at 911.355 kb on - strand, within CCNA_00840at 911.355 kb on - strand, within CCNA_00840at 911.372 kb on + strand, within CCNA_00840at 911.380 kb on - strand, within CCNA_00840at 911.382 kb on + strand, within CCNA_00840at 911.481 kb on + strand, within CCNA_00840at 911.481 kb on + strand, within CCNA_00840at 911.481 kb on + strand, within CCNA_00840at 911.489 kb on - strand, within CCNA_00840at 911.489 kb on - strand, within CCNA_00840at 911.539 kb on + strand, within CCNA_00840at 911.567 kb on + strand, within CCNA_00840at 911.603 kb on + strandat 911.603 kb on + strandat 911.603 kb on + strandat 911.611 kb on - strandat 911.611 kb on - strandat 911.611 kb on - strandat 911.621 kb on - strandat 911.650 kb on + strandat 911.711 kb on - strandat 911.719 kb on + strandat 911.725 kb on - strandat 911.807 kb on + strandat 911.815 kb on - strandat 911.815 kb on - strandat 911.833 kb on + strandat 911.875 kb on - strandat 911.893 kb on - strandat 911.911 kb on + strandat 911.916 kb on + strandat 911.916 kb on + strandat 911.916 kb on + strandat 911.916 kb on + strandat 911.918 kb on + strandat 911.919 kb on - strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.926 kb on - strandat 911.926 kb on - strandat 911.940 kb on - strandat 911.975 kb on - strand, within CCNA_00841at 912.004 kb on - strand, within CCNA_00841at 912.004 kb on - strand, within CCNA_00841at 912.004 kb on - strand, within CCNA_00841at 912.015 kb on + strand, within CCNA_00841at 912.016 kb on + strand, within CCNA_00841at 912.024 kb on - strand, within CCNA_00841at 912.024 kb on - strand, within CCNA_00841at 912.029 kb on - strand, within CCNA_00841at 912.063 kb on + strand, within CCNA_00841at 912.064 kb on + strand, within CCNA_00841at 912.066 kb on - strand, within CCNA_00841at 912.076 kb on - strand, within CCNA_00841at 912.111 kb on + strand, within CCNA_00841at 912.138 kb on - strand, within CCNA_00841at 912.147 kb on - strand, within CCNA_00841at 912.166 kb on - strand, within CCNA_00841at 912.166 kb on - strand, within CCNA_00841at 912.176 kb on + strand, within CCNA_00841at 912.184 kb on - strand, within CCNA_00841at 912.255 kb on - strand, within CCNA_00841at 912.264 kb on - strand, within CCNA_00841at 912.271 kb on + strand, within CCNA_00841at 912.279 kb on - strand, within CCNA_00841at 912.332 kb on - strand, within CCNA_00841at 912.336 kb on + strand, within CCNA_00841at 912.341 kb on + strand, within CCNA_00841at 912.346 kb on + strand, within CCNA_00841at 912.346 kb on + strand, within CCNA_00841at 912.346 kb on + strand, within CCNA_00841at 912.349 kb on - strand, within CCNA_00841at 912.351 kb on + strand, within CCNA_00841at 912.354 kb on - strand, within CCNA_00841at 912.355 kb on - strand, within CCNA_00841at 912.367 kb on - strand, within CCNA_00841at 912.383 kb on + strand, within CCNA_00841at 912.390 kb on - strand, within CCNA_00841at 912.393 kb on + strand, within CCNA_00841at 912.438 kb on - strand, within CCNA_00841at 912.438 kb on - strand, within CCNA_00841at 912.471 kb on - strand, within CCNA_00841at 912.481 kb on + strand, within CCNA_00841at 912.489 kb on - strand, within CCNA_00841at 912.496 kb on + strand, within CCNA_00841at 912.496 kb on + strand, within CCNA_00841at 912.500 kb on - strand, within CCNA_00841at 912.500 kb on - strand, within CCNA_00841at 912.500 kb on - strand, within CCNA_00841at 912.593 kb on + strand, within CCNA_00841at 912.593 kb on + strand, within CCNA_00841at 912.593 kb on + strand, within CCNA_00841at 912.594 kb on - strand, within CCNA_00841at 912.632 kb on + strand, within CCNA_00841at 912.632 kb on + strand, within CCNA_00841at 912.657 kb on + strand, within CCNA_00841at 912.674 kb on - strand, within CCNA_00841at 912.696 kb on - strand, within CCNA_00841at 912.706 kb on + strand, within CCNA_00841at 912.709 kb on - strand, within CCNA_00841at 912.714 kb on - strand, within CCNA_00841at 912.759 kb on - strand, within CCNA_00841at 912.765 kb on - strand, within CCNA_00841at 912.882 kb on - strand, within CCNA_00841at 912.897 kb on + strand, within CCNA_00841at 912.897 kb on + strand, within CCNA_00841at 912.916 kb on + strand, within CCNA_00841at 912.941 kb on + strand, within CCNA_00841at 913.061 kb on - strand, within CCNA_00841at 913.114 kb on - strand, within CCNA_00841at 913.125 kb on - strand, within CCNA_00841at 913.126 kb on - strand, within CCNA_00841at 913.126 kb on - strand, within CCNA_00841at 913.131 kb on + strand, within CCNA_00841at 913.133 kb on + strand, within CCNA_00841at 913.160 kb on + strand, within CCNA_00841at 913.168 kb on - strand, within CCNA_00841at 913.183 kb on - strand, within CCNA_00841at 913.183 kb on - strand, within CCNA_00841at 913.187 kb on + strand, within CCNA_00841at 913.187 kb on + strand, within CCNA_00841at 913.194 kb on + strand, within CCNA_00841at 913.195 kb on - strand, within CCNA_00841at 913.199 kb on + strand, within CCNA_00841at 913.211 kb on + strand, within CCNA_00841at 913.235 kb on + strand, within CCNA_00841at 913.244 kb on + strand, within CCNA_00841at 913.256 kb on + strand, within CCNA_00841at 913.256 kb on + strand, within CCNA_00841at 913.256 kb on + strand, within CCNA_00841at 913.353 kb on - strandat 913.388 kb on + strandat 913.519 kb on - strandat 913.555 kb on + strandat 913.641 kb on - strandat 913.691 kb on + strand, within CCNA_00842at 913.705 kb on + strand, within CCNA_00842at 913.707 kb on + strand, within CCNA_00842at 913.723 kb on - strand, within CCNA_00842at 913.723 kb on - strand, within CCNA_00842at 913.752 kb on + strand, within CCNA_00842at 913.786 kb on + strand, within CCNA_00842at 913.800 kb on + strand, within CCNA_00842at 913.801 kb on - strand, within CCNA_00842at 913.810 kb on + strand, within CCNA_00842at 913.817 kb on + strand, within CCNA_00842at 913.830 kb on + strand, within CCNA_00842at 913.830 kb on + strand, within CCNA_00842at 913.835 kb on + strand, within CCNA_00842at 913.835 kb on + strand, within CCNA_00842at 913.838 kb on - strand, within CCNA_00842at 913.838 kb on - strand, within CCNA_00842at 913.838 kb on - strand, within CCNA_00842at 913.843 kb on - strand, within CCNA_00842at 913.843 kb on - strand, within CCNA_00842at 913.843 kb on - strand, within CCNA_00842at 913.858 kb on - strand, within CCNA_00842at 913.858 kb on - strand, within CCNA_00842at 913.869 kb on + strand, within CCNA_00842at 913.872 kb on - strand, within CCNA_00842at 913.881 kb on + strand, within CCNA_00842at 913.915 kb on + strand, within CCNA_00842at 913.934 kb on - strand, within CCNA_00842at 913.945 kb on + strand, within CCNA_00842at 913.990 kb on + strand, within CCNA_00842at 913.990 kb on - strand, within CCNA_00842at 913.995 kb on + strand, within CCNA_00842at 913.995 kb on + strand, within CCNA_00842at 914.000 kb on + strand, within CCNA_00842at 914.000 kb on + strand, within CCNA_00842at 914.003 kb on - strand, within CCNA_00842at 914.008 kb on - strand, within CCNA_00842at 914.018 kb on + strand, within CCNA_00842at 914.019 kb on + strand, within CCNA_00842at 914.027 kb on - strand, within CCNA_00842at 914.068 kb on + strand, within CCNA_00842at 914.076 kb on - strand, within CCNA_00842at 914.092 kb on - strand, within CCNA_00842at 914.120 kb on + strand, within CCNA_00842at 914.189 kb on - strand, within CCNA_00842at 914.199 kb on - strand, within CCNA_00842at 914.203 kb on + strand, within CCNA_00842at 914.204 kb on - strand, within CCNA_00842at 914.239 kb on + strand, within CCNA_00842at 914.247 kb on - strand, within CCNA_00842at 914.249 kb on + strand, within CCNA_00842at 914.266 kb on - strand, within CCNA_00842at 914.274 kb on + strand, within CCNA_00842at 914.330 kb on + strand, within CCNA_00842

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0001 mg/ml
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910,844 + CCNA_00840 0.51 -1.2
910,849 + CCNA_00840 0.51 +0.5
910,849 + CCNA_00840 0.51 -1.1
910,852 - CCNA_00840 0.51 -0.9
910,857 - CCNA_00840 0.51 -0.4
910,867 + +0.7
910,874 - CCNA_00840 0.52 +0.3
910,875 - CCNA_00840 0.52 -0.2
910,875 - CCNA_00840 0.52 -0.2
910,915 + CCNA_00840 0.54 +1.3
910,915 + CCNA_00840 0.54 -0.3
910,915 + CCNA_00840 0.54 -1.4
910,957 + CCNA_00840 0.57 -0.6
910,962 + CCNA_00840 0.57 +0.4
910,970 - CCNA_00840 0.57 -1.0
910,981 + CCNA_00840 0.58 -0.2
910,994 - CCNA_00840 0.58 -1.8
911,085 - CCNA_00840 0.63 +1.7
911,107 + CCNA_00840 0.64 -0.8
911,115 - CCNA_00840 0.65 +0.6
911,115 - CCNA_00840 0.65 -0.1
911,166 + CCNA_00840 0.67 +0.1
911,181 - CCNA_00840 0.68 -0.1
911,194 + CCNA_00840 0.69 -0.8
911,194 + CCNA_00840 0.69 -0.4
911,202 - CCNA_00840 0.69 -1.6
911,253 - CCNA_00840 0.72 -1.0
911,281 + CCNA_00840 0.73 +0.0
911,300 - CCNA_00840 0.74 +0.6
911,325 + CCNA_00840 0.76 -1.6
911,355 - CCNA_00840 0.77 +0.3
911,355 - CCNA_00840 0.77 -1.4
911,372 + CCNA_00840 0.78 -0.1
911,380 - CCNA_00840 0.79 -0.7
911,382 + CCNA_00840 0.79 -0.1
911,481 + CCNA_00840 0.84 +0.3
911,481 + CCNA_00840 0.84 -0.9
911,481 + CCNA_00840 0.84 -0.3
911,489 - CCNA_00840 0.84 -0.7
911,489 - CCNA_00840 0.84 +0.9
911,539 + CCNA_00840 0.87 +0.7
911,567 + CCNA_00840 0.88 +1.4
911,603 + -1.7
911,603 + -0.6
911,603 + -0.1
911,611 - +0.6
911,611 - +0.3
911,611 - +0.3
911,621 - +1.4
911,650 + +0.1
911,711 - +0.2
911,719 + +0.4
911,725 - -0.7
911,807 + -1.1
911,815 - -1.4
911,815 - +0.1
911,833 + +2.3
911,875 - -1.6
911,893 - +0.4
911,911 + -0.8
911,916 + +1.1
911,916 + -0.3
911,916 + -1.0
911,916 + +0.2
911,918 + -2.9
911,919 - +0.3
911,924 - -0.9
911,924 - +0.9
911,924 - -0.0
911,924 - -0.9
911,924 - +1.5
911,924 - +0.4
911,924 - +0.8
911,924 - -0.8
911,924 - -0.7
911,926 - -1.2
911,926 - +2.3
911,940 - +0.5
911,975 - CCNA_00841 0.11 -2.9
912,004 - CCNA_00841 0.12 -1.2
912,004 - CCNA_00841 0.12 +0.7
912,004 - CCNA_00841 0.12 +0.5
912,015 + CCNA_00841 0.13 -0.7
912,016 + CCNA_00841 0.13 +0.0
912,024 - CCNA_00841 0.14 -0.8
912,024 - CCNA_00841 0.14 -2.4
912,029 - CCNA_00841 0.14 -0.2
912,063 + CCNA_00841 0.16 -1.1
912,064 + CCNA_00841 0.16 -2.6
912,066 - CCNA_00841 0.16 +0.2
912,076 - CCNA_00841 0.17 +1.4
912,111 + CCNA_00841 0.19 -1.0
912,138 - CCNA_00841 0.21 -1.9
912,147 - CCNA_00841 0.21 +0.3
912,166 - CCNA_00841 0.22 -0.4
912,166 - CCNA_00841 0.22 +0.2
912,176 + CCNA_00841 0.23 +2.3
912,184 - CCNA_00841 0.24 -0.6
912,255 - CCNA_00841 0.28 -0.4
912,264 - CCNA_00841 0.29 -0.4
912,271 + CCNA_00841 0.29 +0.1
912,279 - CCNA_00841 0.29 -0.0
912,332 - CCNA_00841 0.33 -1.0
912,336 + CCNA_00841 0.33 -0.6
912,341 + CCNA_00841 0.33 -0.2
912,346 + CCNA_00841 0.34 -2.1
912,346 + CCNA_00841 0.34 -0.3
912,346 + CCNA_00841 0.34 -0.9
912,349 - CCNA_00841 0.34 -1.1
912,351 + CCNA_00841 0.34 +0.3
912,354 - CCNA_00841 0.34 +1.3
912,355 - CCNA_00841 0.34 -0.2
912,367 - CCNA_00841 0.35 -0.7
912,383 + CCNA_00841 0.36 -1.2
912,390 - CCNA_00841 0.36 -1.5
912,393 + CCNA_00841 0.36 -0.1
912,438 - CCNA_00841 0.39 -2.0
912,438 - CCNA_00841 0.39 -2.7
912,471 - CCNA_00841 0.41 -0.2
912,481 + CCNA_00841 0.42 -0.6
912,489 - CCNA_00841 0.42 +0.4
912,496 + CCNA_00841 0.43 -1.3
912,496 + CCNA_00841 0.43 -0.1
912,500 - CCNA_00841 0.43 -2.6
912,500 - CCNA_00841 0.43 +0.7
912,500 - CCNA_00841 0.43 -0.6
912,593 + CCNA_00841 0.49 +0.9
912,593 + CCNA_00841 0.49 +0.4
912,593 + CCNA_00841 0.49 +0.9
912,594 - CCNA_00841 0.49 +1.3
912,632 + CCNA_00841 0.51 -0.4
912,632 + CCNA_00841 0.51 -1.2
912,657 + CCNA_00841 0.53 -1.0
912,674 - CCNA_00841 0.54 -1.6
912,696 - CCNA_00841 0.55 +0.1
912,706 + CCNA_00841 0.56 +0.0
912,709 - CCNA_00841 0.56 -0.6
912,714 - CCNA_00841 0.56 -0.4
912,759 - CCNA_00841 0.59 +0.0
912,765 - CCNA_00841 0.59 +1.4
912,882 - CCNA_00841 0.67 +0.6
912,897 + CCNA_00841 0.68 -1.9
912,897 + CCNA_00841 0.68 -0.8
912,916 + CCNA_00841 0.69 -1.3
912,941 + CCNA_00841 0.70 -1.1
913,061 - CCNA_00841 0.78 -2.2
913,114 - CCNA_00841 0.81 -1.8
913,125 - CCNA_00841 0.82 -0.7
913,126 - CCNA_00841 0.82 -0.1
913,126 - CCNA_00841 0.82 -0.7
913,131 + CCNA_00841 0.82 -1.1
913,133 + CCNA_00841 0.82 +0.4
913,160 + CCNA_00841 0.84 +0.9
913,168 - CCNA_00841 0.84 -0.6
913,183 - CCNA_00841 0.85 -0.8
913,183 - CCNA_00841 0.85 +0.9
913,187 + CCNA_00841 0.86 +0.4
913,187 + CCNA_00841 0.86 -0.3
913,194 + CCNA_00841 0.86 -1.2
913,195 - CCNA_00841 0.86 +1.4
913,199 + CCNA_00841 0.86 -0.2
913,211 + CCNA_00841 0.87 +0.2
913,235 + CCNA_00841 0.89 -0.3
913,244 + CCNA_00841 0.89 -0.8
913,256 + CCNA_00841 0.90 -0.9
913,256 + CCNA_00841 0.90 -0.2
913,256 + CCNA_00841 0.90 +0.0
913,353 - -1.2
913,388 + -1.5
913,519 - +0.3
913,555 + -0.1
913,641 - -0.6
913,691 + CCNA_00842 0.11 +0.1
913,705 + CCNA_00842 0.11 +0.7
913,707 + CCNA_00842 0.11 +1.8
913,723 - CCNA_00842 0.12 -1.0
913,723 - CCNA_00842 0.12 +0.3
913,752 + CCNA_00842 0.14 -0.4
913,786 + CCNA_00842 0.16 -1.4
913,800 + CCNA_00842 0.17 +0.7
913,801 - CCNA_00842 0.17 +0.7
913,810 + CCNA_00842 0.17 -0.8
913,817 + CCNA_00842 0.18 +1.7
913,830 + CCNA_00842 0.19 -1.1
913,830 + CCNA_00842 0.19 -0.3
913,835 + CCNA_00842 0.19 +0.4
913,835 + CCNA_00842 0.19 -1.2
913,838 - CCNA_00842 0.19 +0.4
913,838 - CCNA_00842 0.19 -0.6
913,838 - CCNA_00842 0.19 +1.2
913,843 - CCNA_00842 0.19 +0.3
913,843 - CCNA_00842 0.19 +1.1
913,843 - CCNA_00842 0.19 -1.8
913,858 - CCNA_00842 0.20 +0.1
913,858 - CCNA_00842 0.20 +0.3
913,869 + CCNA_00842 0.21 -0.7
913,872 - CCNA_00842 0.21 -1.2
913,881 + CCNA_00842 0.22 -0.9
913,915 + CCNA_00842 0.24 -0.1
913,934 - CCNA_00842 0.25 +1.5
913,945 + CCNA_00842 0.25 -0.3
913,990 + CCNA_00842 0.28 -0.3
913,990 - CCNA_00842 0.28 -0.1
913,995 + CCNA_00842 0.28 -0.6
913,995 + CCNA_00842 0.28 +0.2
914,000 + CCNA_00842 0.28 -0.4
914,000 + CCNA_00842 0.28 +0.3
914,003 - CCNA_00842 0.29 -1.1
914,008 - CCNA_00842 0.29 -0.3
914,018 + CCNA_00842 0.30 +2.4
914,019 + CCNA_00842 0.30 +0.2
914,027 - CCNA_00842 0.30 -0.3
914,068 + CCNA_00842 0.32 -1.0
914,076 - CCNA_00842 0.33 -1.4
914,092 - CCNA_00842 0.34 -1.5
914,120 + CCNA_00842 0.35 +0.8
914,189 - CCNA_00842 0.39 +1.2
914,199 - CCNA_00842 0.40 -0.4
914,203 + CCNA_00842 0.40 -2.3
914,204 - CCNA_00842 0.40 -0.0
914,239 + CCNA_00842 0.42 -1.2
914,247 - CCNA_00842 0.43 -1.1
914,249 + CCNA_00842 0.43 -2.2
914,266 - CCNA_00842 0.44 +0.7
914,274 + CCNA_00842 0.44 -0.6
914,330 + CCNA_00842 0.48 +0.9

Or see this region's nucleotide sequence