Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00168

Experiment: PYE with Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00167 and CCNA_00168 are separated by 84 nucleotidesCCNA_00168 and CCNA_00169 are separated by 577 nucleotides CCNA_00167: CCNA_00167 - metallophosphatase family protein, at 179,311 to 180,120 _00167 CCNA_00168: CCNA_00168 - polysaccharide export protein, at 180,205 to 180,801 _00168 CCNA_00169: CCNA_00169 - hypothetical protein, at 181,379 to 182,917 _00169 Position (kb) 180 181Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 179.249 kb on + strandat 179.249 kb on + strandat 179.334 kb on + strandat 179.334 kb on + strandat 179.334 kb on + strandat 179.341 kb on + strandat 179.349 kb on - strandat 179.354 kb on - strandat 179.377 kb on + strandat 179.379 kb on + strandat 179.379 kb on + strandat 179.379 kb on + strandat 179.381 kb on + strandat 179.387 kb on - strandat 179.389 kb on - strandat 179.389 kb on - strandat 179.418 kb on - strand, within CCNA_00167at 179.434 kb on + strand, within CCNA_00167at 179.469 kb on - strand, within CCNA_00167at 179.471 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.551 kb on - strand, within CCNA_00167at 179.561 kb on + strand, within CCNA_00167at 179.587 kb on + strand, within CCNA_00167at 179.636 kb on + strand, within CCNA_00167at 179.636 kb on + strand, within CCNA_00167at 179.751 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.806 kb on - strand, within CCNA_00167at 179.819 kb on + strand, within CCNA_00167at 179.826 kb on + strand, within CCNA_00167at 179.857 kb on + strand, within CCNA_00167at 179.868 kb on + strand, within CCNA_00167at 179.898 kb on + strand, within CCNA_00167at 179.903 kb on + strand, within CCNA_00167at 179.945 kb on + strand, within CCNA_00167at 179.983 kb on - strand, within CCNA_00167at 180.030 kb on - strand, within CCNA_00167at 180.039 kb on + strand, within CCNA_00167at 180.041 kb on + strandat 180.081 kb on + strandat 180.081 kb on + strandat 180.115 kb on + strandat 180.115 kb on + strandat 180.115 kb on + strandat 180.123 kb on - strandat 180.123 kb on - strandat 180.143 kb on + strandat 180.290 kb on + strand, within CCNA_00168at 180.295 kb on + strand, within CCNA_00168at 180.295 kb on + strand, within CCNA_00168at 180.305 kb on + strand, within CCNA_00168at 180.305 kb on + strand, within CCNA_00168at 180.313 kb on - strand, within CCNA_00168at 180.360 kb on - strand, within CCNA_00168at 180.360 kb on - strand, within CCNA_00168at 180.372 kb on + strand, within CCNA_00168at 180.391 kb on + strand, within CCNA_00168at 180.428 kb on + strand, within CCNA_00168at 180.428 kb on + strand, within CCNA_00168at 180.433 kb on + strand, within CCNA_00168at 180.433 kb on + strand, within CCNA_00168at 180.462 kb on + strand, within CCNA_00168at 180.462 kb on + strand, within CCNA_00168at 180.462 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.500 kb on - strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.510 kb on + strand, within CCNA_00168at 180.513 kb on - strand, within CCNA_00168at 180.516 kb on + strand, within CCNA_00168at 180.518 kb on - strand, within CCNA_00168at 180.576 kb on + strand, within CCNA_00168at 180.595 kb on + strand, within CCNA_00168at 180.603 kb on + strand, within CCNA_00168at 180.603 kb on + strand, within CCNA_00168at 180.616 kb on + strand, within CCNA_00168at 180.636 kb on - strand, within CCNA_00168at 180.637 kb on + strand, within CCNA_00168at 180.645 kb on - strand, within CCNA_00168at 180.726 kb on + strand, within CCNA_00168at 180.726 kb on + strand, within CCNA_00168at 180.726 kb on + strand, within CCNA_00168at 180.734 kb on - strand, within CCNA_00168at 180.734 kb on - strand, within CCNA_00168at 180.745 kb on + strandat 180.779 kb on + strandat 180.795 kb on + strandat 180.881 kb on + strandat 180.887 kb on + strandat 180.887 kb on + strandat 180.887 kb on + strandat 180.895 kb on - strandat 180.895 kb on - strandat 180.919 kb on + strandat 180.940 kb on - strandat 180.961 kb on - strandat 181.274 kb on - strandat 181.315 kb on + strandat 181.363 kb on + strandat 181.377 kb on + strandat 181.384 kb on - strandat 181.385 kb on - strandat 181.392 kb on - strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.499 kb on + strandat 181.508 kb on + strandat 181.547 kb on + strand, within CCNA_00169at 181.555 kb on - strand, within CCNA_00169at 181.590 kb on - strand, within CCNA_00169at 181.590 kb on - strand, within CCNA_00169at 181.615 kb on - strand, within CCNA_00169at 181.635 kb on - strand, within CCNA_00169at 181.654 kb on - strand, within CCNA_00169at 181.669 kb on + strand, within CCNA_00169at 181.669 kb on + strand, within CCNA_00169at 181.698 kb on - strand, within CCNA_00169at 181.730 kb on + strand, within CCNA_00169at 181.732 kb on - strand, within CCNA_00169at 181.735 kb on + strand, within CCNA_00169at 181.735 kb on + strand, within CCNA_00169at 181.738 kb on - strand, within CCNA_00169at 181.748 kb on + strand, within CCNA_00169at 181.771 kb on - strand, within CCNA_00169at 181.790 kb on + strand, within CCNA_00169at 181.798 kb on - strand, within CCNA_00169

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0001 mg/ml
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179,249 + +2.0
179,249 + -1.2
179,334 + -0.7
179,334 + +1.2
179,334 + +1.8
179,341 + +0.6
179,349 - +4.0
179,354 - -1.6
179,377 + +0.6
179,379 + -1.0
179,379 + +0.9
179,379 + +1.0
179,381 + +1.4
179,387 - +0.4
179,389 - -1.7
179,389 - +0.7
179,418 - CCNA_00167 0.13 -0.3
179,434 + CCNA_00167 0.15 +1.1
179,469 - CCNA_00167 0.20 +2.4
179,471 + CCNA_00167 0.20 +0.7
179,543 + CCNA_00167 0.29 +1.0
179,543 + CCNA_00167 0.29 +1.0
179,543 + CCNA_00167 0.29 +0.8
179,543 + CCNA_00167 0.29 +1.0
179,551 - CCNA_00167 0.30 -0.7
179,561 + CCNA_00167 0.31 +0.8
179,587 + CCNA_00167 0.34 +0.7
179,636 + CCNA_00167 0.40 +1.6
179,636 + CCNA_00167 0.40 +0.9
179,751 + CCNA_00167 0.54 +1.2
179,798 + CCNA_00167 0.60 +1.0
179,798 + CCNA_00167 0.60 +1.3
179,806 - CCNA_00167 0.61 -0.6
179,819 + CCNA_00167 0.63 +1.5
179,826 + CCNA_00167 0.64 +1.1
179,857 + CCNA_00167 0.67 +0.8
179,868 + CCNA_00167 0.69 +1.3
179,898 + CCNA_00167 0.72 +0.9
179,903 + CCNA_00167 0.73 +1.7
179,945 + CCNA_00167 0.78 +0.9
179,983 - CCNA_00167 0.83 -0.5
180,030 - CCNA_00167 0.89 +0.4
180,039 + CCNA_00167 0.90 +1.2
180,041 + +0.7
180,081 + +1.1
180,081 + +0.9
180,115 + -0.4
180,115 + +1.1
180,115 + +1.0
180,123 - -0.4
180,123 - -0.4
180,143 + +1.1
180,290 + CCNA_00168 0.14 +1.1
180,295 + CCNA_00168 0.15 +1.9
180,295 + CCNA_00168 0.15 +1.8
180,305 + CCNA_00168 0.17 +1.1
180,305 + CCNA_00168 0.17 +1.0
180,313 - CCNA_00168 0.18 -1.6
180,360 - CCNA_00168 0.26 +0.0
180,360 - CCNA_00168 0.26 -0.3
180,372 + CCNA_00168 0.28 +1.0
180,391 + CCNA_00168 0.31 +1.1
180,428 + CCNA_00168 0.37 +1.5
180,428 + CCNA_00168 0.37 +1.1
180,433 + CCNA_00168 0.38 +1.5
180,433 + CCNA_00168 0.38 +1.3
180,462 + CCNA_00168 0.43 +1.0
180,462 + CCNA_00168 0.43 +1.4
180,462 + CCNA_00168 0.43 +0.6
180,492 + CCNA_00168 0.48 +1.2
180,492 + CCNA_00168 0.48 +1.8
180,492 + CCNA_00168 0.48 +0.9
180,500 - CCNA_00168 0.49 -0.6
180,505 + CCNA_00168 0.50 +1.7
180,505 + CCNA_00168 0.50 +1.1
180,505 + CCNA_00168 0.50 +1.5
180,510 + CCNA_00168 0.51 +0.8
180,513 - CCNA_00168 0.52 -0.9
180,516 + CCNA_00168 0.52 +1.1
180,518 - CCNA_00168 0.52 -0.6
180,576 + CCNA_00168 0.62 +1.4
180,595 + CCNA_00168 0.65 +1.2
180,603 + CCNA_00168 0.67 +1.2
180,603 + CCNA_00168 0.67 +1.2
180,616 + CCNA_00168 0.69 +1.4
180,636 - CCNA_00168 0.72 -0.4
180,637 + CCNA_00168 0.72 +0.6
180,645 - CCNA_00168 0.74 +0.4
180,726 + CCNA_00168 0.87 +1.8
180,726 + CCNA_00168 0.87 +1.6
180,726 + CCNA_00168 0.87 +1.6
180,734 - CCNA_00168 0.89 -1.8
180,734 - CCNA_00168 0.89 -0.8
180,745 + +1.7
180,779 + +1.6
180,795 + +1.7
180,881 + +0.0
180,887 + +0.2
180,887 + +1.0
180,887 + +0.1
180,895 - -0.8
180,895 - -0.9
180,919 + +0.4
180,940 - -1.1
180,961 - -1.2
181,274 - -2.3
181,315 + -0.7
181,363 + -0.0
181,377 + -1.3
181,384 - -0.7
181,385 - +1.4
181,392 - +0.0
181,403 + -1.4
181,403 + -1.1
181,403 + -1.1
181,403 + +0.5
181,403 + +1.6
181,499 + -1.7
181,508 + -1.6
181,547 + CCNA_00169 0.11 +0.3
181,555 - CCNA_00169 0.11 -0.9
181,590 - CCNA_00169 0.14 +1.3
181,590 - CCNA_00169 0.14 -0.1
181,615 - CCNA_00169 0.15 -0.9
181,635 - CCNA_00169 0.17 -0.7
181,654 - CCNA_00169 0.18 +0.3
181,669 + CCNA_00169 0.19 -0.2
181,669 + CCNA_00169 0.19 -1.0
181,698 - CCNA_00169 0.21 -1.5
181,730 + CCNA_00169 0.23 +0.4
181,732 - CCNA_00169 0.23 -0.3
181,735 + CCNA_00169 0.23 +0.8
181,735 + CCNA_00169 0.23 -1.1
181,738 - CCNA_00169 0.23 -1.1
181,748 + CCNA_00169 0.24 -1.3
181,771 - CCNA_00169 0.25 -2.6
181,790 + CCNA_00169 0.27 +0.0
181,798 - CCNA_00169 0.27 -1.4

Or see this region's nucleotide sequence