Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07760 and PGA1_c07770 are separated by 12 nucleotides PGA1_c07770 and PGA1_c07780 are separated by 116 nucleotides PGA1_c07780 and PGA1_c07790 are separated by 23 nucleotides PGA1_c07790 and PGA1_c07800 are separated by 128 nucleotides
PGA1_c07760: PGA1_c07760 - TRAP transporter, subunit DctM, at 803,141 to 804,469
_c07760
PGA1_c07770: PGA1_c07770 - TRAP transporter, subunit DctQ, at 804,482 to 804,994
_c07770
PGA1_c07780: PGA1_c07780 - TRAP transporter, subunit DctP, at 805,111 to 806,256
_c07780
PGA1_c07790: PGA1_c07790 - hypothetical protein, at 806,280 to 806,465
_c07790
PGA1_c07800: PGA1_c07800 - putative transcriptional regulator, lacI family, at 806,594 to 807,619
_c07800
Position (kb) 805
806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 804.126 kb on + strand, within PGA1_c07760 at 804.139 kb on - strand, within PGA1_c07760 at 804.139 kb on - strand, within PGA1_c07760 at 804.173 kb on + strand, within PGA1_c07760 at 804.181 kb on - strand, within PGA1_c07760 at 804.260 kb on + strand, within PGA1_c07760 at 804.265 kb on + strand, within PGA1_c07760 at 804.267 kb on - strand, within PGA1_c07760 at 804.282 kb on - strand, within PGA1_c07760 at 804.345 kb on - strand at 804.436 kb on + strand at 804.442 kb on + strand at 804.531 kb on - strand at 804.552 kb on + strand, within PGA1_c07770 at 804.621 kb on - strand, within PGA1_c07770 at 804.659 kb on + strand, within PGA1_c07770 at 804.659 kb on + strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.711 kb on - strand, within PGA1_c07770 at 804.729 kb on + strand, within PGA1_c07770 at 804.737 kb on - strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.767 kb on - strand, within PGA1_c07770 at 804.824 kb on - strand, within PGA1_c07770 at 804.859 kb on + strand, within PGA1_c07770 at 804.859 kb on + strand, within PGA1_c07770 at 804.881 kb on + strand, within PGA1_c07770 at 804.918 kb on + strand, within PGA1_c07770 at 804.941 kb on + strand, within PGA1_c07770 at 804.941 kb on + strand, within PGA1_c07770 at 804.950 kb on - strand at 805.007 kb on + strand at 805.031 kb on + strand at 805.039 kb on - strand at 805.070 kb on - strand at 805.108 kb on + strand at 805.137 kb on - strand at 805.137 kb on - strand at 805.145 kb on + strand at 805.196 kb on + strand at 805.196 kb on + strand at 805.204 kb on - strand at 805.237 kb on - strand, within PGA1_c07780 at 805.283 kb on + strand, within PGA1_c07780 at 805.286 kb on - strand, within PGA1_c07780 at 805.289 kb on + strand, within PGA1_c07780 at 805.289 kb on + strand, within PGA1_c07780 at 805.297 kb on - strand, within PGA1_c07780 at 805.315 kb on + strand, within PGA1_c07780 at 805.342 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.392 kb on - strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.435 kb on - strand, within PGA1_c07780 at 805.435 kb on - strand, within PGA1_c07780 at 805.449 kb on - strand, within PGA1_c07780 at 805.455 kb on + strand, within PGA1_c07780 at 805.455 kb on + strand, within PGA1_c07780 at 805.456 kb on + strand, within PGA1_c07780 at 805.464 kb on - strand, within PGA1_c07780 at 805.495 kb on + strand, within PGA1_c07780 at 805.495 kb on + strand, within PGA1_c07780 at 805.495 kb on + strand, within PGA1_c07780 at 805.565 kb on + strand, within PGA1_c07780 at 805.570 kb on + strand, within PGA1_c07780 at 805.577 kb on + strand, within PGA1_c07780 at 805.685 kb on + strand, within PGA1_c07780 at 805.726 kb on + strand, within PGA1_c07780 at 805.726 kb on + strand, within PGA1_c07780 at 805.734 kb on - strand, within PGA1_c07780 at 805.762 kb on - strand, within PGA1_c07780 at 805.767 kb on + strand, within PGA1_c07780 at 805.767 kb on + strand, within PGA1_c07780 at 805.812 kb on + strand, within PGA1_c07780 at 805.820 kb on - strand, within PGA1_c07780 at 805.825 kb on + strand, within PGA1_c07780 at 805.835 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.845 kb on + strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.853 kb on - strand, within PGA1_c07780 at 805.858 kb on + strand, within PGA1_c07780 at 805.903 kb on - strand, within PGA1_c07780 at 805.904 kb on - strand, within PGA1_c07780 at 805.907 kb on - strand, within PGA1_c07780 at 805.950 kb on - strand, within PGA1_c07780 at 806.047 kb on + strand, within PGA1_c07780 at 806.047 kb on + strand, within PGA1_c07780 at 806.053 kb on - strand, within PGA1_c07780 at 806.055 kb on + strand at 806.063 kb on - strand, within PGA1_c07780 at 806.070 kb on + strand, within PGA1_c07780 at 806.101 kb on - strand, within PGA1_c07780 at 806.136 kb on + strand, within PGA1_c07780 at 806.141 kb on + strand, within PGA1_c07780 at 806.141 kb on + strand, within PGA1_c07780 at 806.141 kb on + strand, within PGA1_c07780 at 806.143 kb on + strand at 806.144 kb on - strand at 806.153 kb on + strand at 806.167 kb on + strand at 806.172 kb on + strand at 806.172 kb on + strand at 806.180 kb on - strand at 806.425 kb on - strand, within PGA1_c07790 at 806.447 kb on - strand at 806.449 kb on + strand at 806.479 kb on - strand at 806.586 kb on + strand at 806.638 kb on + strand at 806.638 kb on - strand at 806.658 kb on + strand at 806.663 kb on + strand at 806.663 kb on + strand at 806.663 kb on + strand at 806.663 kb on + strand at 806.787 kb on + strand, within PGA1_c07800 at 806.818 kb on + strand, within PGA1_c07800 at 806.841 kb on + strand, within PGA1_c07800 at 806.841 kb on + strand, within PGA1_c07800 at 806.851 kb on - strand, within PGA1_c07800 at 806.851 kb on - strand, within PGA1_c07800 at 806.877 kb on + strand, within PGA1_c07800 at 806.877 kb on + strand, within PGA1_c07800 at 806.901 kb on - strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.932 kb on + strand, within PGA1_c07800 at 806.935 kb on - strand, within PGA1_c07800 at 806.960 kb on + strand, within PGA1_c07800 at 806.982 kb on - strand, within PGA1_c07800 at 807.032 kb on - strand, within PGA1_c07800 at 807.081 kb on - strand, within PGA1_c07800
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 804,126 + PGA1_c07760 0.74 +2.9 804,139 - PGA1_c07760 0.75 -1.5 804,139 - PGA1_c07760 0.75 +1.2 804,173 + PGA1_c07760 0.78 +1.3 804,181 - PGA1_c07760 0.78 -1.0 804,260 + PGA1_c07760 0.84 -1.1 804,265 + PGA1_c07760 0.85 -0.3 804,267 - PGA1_c07760 0.85 -1.6 804,282 - PGA1_c07760 0.86 +0.0 804,345 - +0.6 804,436 + +0.6 804,442 + +0.0 804,531 - +1.2 804,552 + PGA1_c07770 0.14 -0.3 804,621 - PGA1_c07770 0.27 +4.3 804,659 + PGA1_c07770 0.35 -2.2 804,659 + PGA1_c07770 0.35 +0.0 804,667 - PGA1_c07770 0.36 +3.8 804,667 - PGA1_c07770 0.36 +1.6 804,667 - PGA1_c07770 0.36 -1.7 804,667 - PGA1_c07770 0.36 -1.2 804,711 - PGA1_c07770 0.45 +1.0 804,729 + PGA1_c07770 0.48 +0.4 804,737 - PGA1_c07770 0.50 -2.2 804,754 + PGA1_c07770 0.53 +1.0 804,754 + PGA1_c07770 0.53 +0.0 804,754 + PGA1_c07770 0.53 +1.6 804,754 + PGA1_c07770 0.53 -1.0 804,754 + PGA1_c07770 0.53 -0.1 804,754 + PGA1_c07770 0.53 +1.9 804,762 - PGA1_c07770 0.55 +2.0 804,762 - PGA1_c07770 0.55 +1.8 804,762 - PGA1_c07770 0.55 +0.6 804,762 - PGA1_c07770 0.55 +1.6 804,762 - PGA1_c07770 0.55 -0.4 804,762 - PGA1_c07770 0.55 +0.3 804,762 - PGA1_c07770 0.55 -1.9 804,762 - PGA1_c07770 0.55 -1.0 804,762 - PGA1_c07770 0.55 +2.2 804,762 - PGA1_c07770 0.55 -1.0 804,762 - PGA1_c07770 0.55 +2.4 804,762 - PGA1_c07770 0.55 +2.0 804,762 - PGA1_c07770 0.55 -2.0 804,767 - PGA1_c07770 0.56 +0.9 804,824 - PGA1_c07770 0.67 +0.3 804,859 + PGA1_c07770 0.73 -2.4 804,859 + PGA1_c07770 0.73 +1.6 804,881 + PGA1_c07770 0.78 -0.7 804,918 + PGA1_c07770 0.85 -1.2 804,941 + PGA1_c07770 0.89 +0.9 804,941 + PGA1_c07770 0.89 -1.0 804,950 - +0.4 805,007 + -1.2 805,031 + -1.0 805,039 - -1.4 805,070 - +0.8 805,108 + +0.6 805,137 - +0.0 805,137 - +1.6 805,145 + +2.5 805,196 + +0.5 805,196 + +1.5 805,204 - +1.4 805,237 - PGA1_c07780 0.11 +1.6 805,283 + PGA1_c07780 0.15 +0.0 805,286 - PGA1_c07780 0.15 +2.5 805,289 + PGA1_c07780 0.16 -1.6 805,289 + PGA1_c07780 0.16 +2.6 805,297 - PGA1_c07780 0.16 +4.1 805,315 + PGA1_c07780 0.18 +1.6 805,342 + PGA1_c07780 0.20 -0.4 805,381 + PGA1_c07780 0.24 +0.3 805,381 + PGA1_c07780 0.24 -2.1 805,381 + PGA1_c07780 0.24 -1.4 805,381 + PGA1_c07780 0.24 -0.4 805,389 - PGA1_c07780 0.24 +1.9 805,389 - PGA1_c07780 0.24 -2.6 805,389 - PGA1_c07780 0.24 +1.8 805,392 - PGA1_c07780 0.25 +0.4 805,403 + PGA1_c07780 0.25 +0.1 805,403 + PGA1_c07780 0.25 +3.9 805,403 + PGA1_c07780 0.25 -2.2 805,435 - PGA1_c07780 0.28 +2.3 805,435 - PGA1_c07780 0.28 -2.0 805,449 - PGA1_c07780 0.29 -1.4 805,455 + PGA1_c07780 0.30 +1.0 805,455 + PGA1_c07780 0.30 -1.2 805,456 + PGA1_c07780 0.30 +2.2 805,464 - PGA1_c07780 0.31 +1.2 805,495 + PGA1_c07780 0.34 +1.8 805,495 + PGA1_c07780 0.34 -1.9 805,495 + PGA1_c07780 0.34 -1.6 805,565 + PGA1_c07780 0.40 +0.4 805,570 + PGA1_c07780 0.40 +1.9 805,577 + PGA1_c07780 0.41 -1.9 805,685 + PGA1_c07780 0.50 +3.6 805,726 + PGA1_c07780 0.54 -1.6 805,726 + PGA1_c07780 0.54 -0.2 805,734 - PGA1_c07780 0.54 +2.0 805,762 - PGA1_c07780 0.57 +0.6 805,767 + PGA1_c07780 0.57 -1.2 805,767 + PGA1_c07780 0.57 +0.7 805,812 + PGA1_c07780 0.61 +0.5 805,820 - PGA1_c07780 0.62 +1.2 805,825 + PGA1_c07780 0.62 +1.5 805,835 + PGA1_c07780 0.63 +1.3 805,845 + PGA1_c07780 0.64 -0.5 805,845 + PGA1_c07780 0.64 -0.2 805,845 + PGA1_c07780 0.64 -0.4 805,845 + PGA1_c07780 0.64 +1.5 805,845 + PGA1_c07780 0.64 +0.7 805,845 + PGA1_c07780 0.64 -1.6 805,845 + PGA1_c07780 0.64 +1.6 805,853 - PGA1_c07780 0.65 +1.4 805,853 - PGA1_c07780 0.65 +0.1 805,853 - PGA1_c07780 0.65 -1.4 805,853 - PGA1_c07780 0.65 +0.5 805,858 + PGA1_c07780 0.65 +0.0 805,903 - PGA1_c07780 0.69 -1.9 805,904 - PGA1_c07780 0.69 +0.8 805,907 - PGA1_c07780 0.69 -2.0 805,950 - PGA1_c07780 0.73 +1.0 806,047 + PGA1_c07780 0.82 -0.1 806,047 + PGA1_c07780 0.82 +1.4 806,053 - PGA1_c07780 0.82 +2.0 806,055 + +1.6 806,063 - PGA1_c07780 0.83 -1.2 806,070 + PGA1_c07780 0.84 -2.6 806,101 - PGA1_c07780 0.86 +0.6 806,136 + PGA1_c07780 0.89 +0.5 806,141 + PGA1_c07780 0.90 +1.8 806,141 + PGA1_c07780 0.90 -1.7 806,141 + PGA1_c07780 0.90 +0.3 806,143 + +1.5 806,144 - -0.9 806,153 + +0.3 806,167 + +0.3 806,172 + +2.9 806,172 + -0.7 806,180 - -1.6 806,425 - PGA1_c07790 0.78 +1.6 806,447 - +2.1 806,449 + -0.7 806,479 - -1.0 806,586 + +1.3 806,638 + +0.9 806,638 - +1.9 806,658 + -0.1 806,663 + +1.6 806,663 + -2.2 806,663 + +3.0 806,663 + +0.6 806,787 + PGA1_c07800 0.19 +0.6 806,818 + PGA1_c07800 0.22 -2.6 806,841 + PGA1_c07800 0.24 +0.6 806,841 + PGA1_c07800 0.24 +1.6 806,851 - PGA1_c07800 0.25 +1.6 806,851 - PGA1_c07800 0.25 +1.0 806,877 + PGA1_c07800 0.28 +0.0 806,877 + PGA1_c07800 0.28 -0.4 806,901 - PGA1_c07800 0.30 +2.2 806,910 + PGA1_c07800 0.31 -0.9 806,910 + PGA1_c07800 0.31 -2.6 806,910 + PGA1_c07800 0.31 -2.7 806,910 + PGA1_c07800 0.31 -0.7 806,910 + PGA1_c07800 0.31 -2.9 806,918 - PGA1_c07800 0.32 -0.7 806,918 - PGA1_c07800 0.32 +2.2 806,918 - PGA1_c07800 0.32 +1.5 806,927 + PGA1_c07800 0.32 +0.6 806,927 + PGA1_c07800 0.32 +1.6 806,927 + PGA1_c07800 0.32 -1.9 806,932 + PGA1_c07800 0.33 +1.6 806,935 - PGA1_c07800 0.33 -1.4 806,960 + PGA1_c07800 0.36 -2.3 806,982 - PGA1_c07800 0.38 -1.6 807,032 - PGA1_c07800 0.43 +0.9 807,081 - PGA1_c07800 0.47 +1.0
Or see this region's nucleotide sequence