Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06180 and PGA1_c06190 are separated by 137 nucleotides PGA1_c06190 and PGA1_c06200 are separated by 64 nucleotides PGA1_c06200 and PGA1_c06210 are separated by 12 nucleotides PGA1_c06210 and PGA1_c06220 are separated by 254 nucleotides
PGA1_c06180: PGA1_c06180 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 631,833 to 632,762
_c06180
PGA1_c06190: PGA1_c06190 - hypothetical protein, at 632,900 to 633,391
_c06190
PGA1_c06200: PGA1_c06200 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 633,456 to 634,085
_c06200
PGA1_c06210: PGA1_c06210 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A, at 634,098 to 634,817
_c06210
PGA1_c06220: PGA1_c06220 - DNA topoisomerase TopA, at 635,072 to 637,774
_c06220
Position (kb) 633
634
635 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 632.473 kb on + strand, within PGA1_c06180 at 632.507 kb on - strand, within PGA1_c06180 at 632.519 kb on - strand, within PGA1_c06180 at 632.602 kb on - strand, within PGA1_c06180 at 632.618 kb on - strand, within PGA1_c06180 at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.711 kb on - strand at 632.713 kb on - strand at 632.721 kb on + strand at 632.742 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.774 kb on - strand at 632.776 kb on + strand at 632.776 kb on + strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.785 kb on - strand at 632.786 kb on - strand at 632.812 kb on + strand at 632.812 kb on + strand at 632.905 kb on - strand at 632.910 kb on + strand at 632.936 kb on + strand at 632.936 kb on + strand at 632.938 kb on + strand at 632.945 kb on - strand at 632.960 kb on + strand, within PGA1_c06190 at 632.966 kb on - strand, within PGA1_c06190 at 632.968 kb on + strand, within PGA1_c06190 at 632.976 kb on - strand, within PGA1_c06190 at 633.002 kb on + strand, within PGA1_c06190 at 633.010 kb on - strand, within PGA1_c06190 at 633.023 kb on + strand, within PGA1_c06190 at 633.026 kb on - strand, within PGA1_c06190 at 633.026 kb on - strand, within PGA1_c06190 at 633.039 kb on + strand, within PGA1_c06190 at 633.042 kb on - strand, within PGA1_c06190 at 633.103 kb on - strand, within PGA1_c06190 at 633.121 kb on + strand, within PGA1_c06190 at 633.137 kb on + strand, within PGA1_c06190 at 633.184 kb on - strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.222 kb on + strand, within PGA1_c06190 at 633.228 kb on - strand, within PGA1_c06190 at 633.257 kb on - strand, within PGA1_c06190 at 633.444 kb on + strand at 633.476 kb on + strand at 633.484 kb on - strand at 633.565 kb on - strand, within PGA1_c06200 at 633.610 kb on - strand, within PGA1_c06200 at 633.695 kb on - strand, within PGA1_c06200 at 633.705 kb on + strand, within PGA1_c06200 at 633.713 kb on - strand, within PGA1_c06200 at 633.731 kb on + strand, within PGA1_c06200 at 633.830 kb on - strand, within PGA1_c06200 at 633.857 kb on + strand, within PGA1_c06200 at 633.880 kb on + strand, within PGA1_c06200 at 633.890 kb on + strand, within PGA1_c06200 at 634.051 kb on - strand at 634.074 kb on + strand at 634.111 kb on - strand at 634.240 kb on + strand, within PGA1_c06210 at 634.414 kb on - strand, within PGA1_c06210 at 634.438 kb on + strand, within PGA1_c06210 at 634.456 kb on - strand, within PGA1_c06210 at 634.491 kb on - strand, within PGA1_c06210 at 634.583 kb on + strand, within PGA1_c06210 at 634.679 kb on - strand, within PGA1_c06210 at 634.733 kb on + strand, within PGA1_c06210 at 634.733 kb on + strand, within PGA1_c06210 at 634.779 kb on + strand at 634.834 kb on - strand at 634.853 kb on + strand at 634.853 kb on + strand at 634.861 kb on - strand at 634.935 kb on + strand at 634.974 kb on - strand at 634.976 kb on + strand at 634.976 kb on + strand at 635.018 kb on + strand at 635.034 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 632,473 + PGA1_c06180 0.69 +1.5 632,507 - PGA1_c06180 0.72 +1.9 632,519 - PGA1_c06180 0.74 +0.1 632,602 - PGA1_c06180 0.83 +0.3 632,618 - PGA1_c06180 0.84 +1.1 632,705 + -1.7 632,705 + +1.7 632,705 + -0.6 632,705 + -0.6 632,705 + +0.9 632,711 - +1.6 632,713 - +2.4 632,721 + +2.8 632,742 + +1.3 632,768 + -3.2 632,768 + -2.0 632,768 + +2.1 632,768 + +1.2 632,768 + +1.1 632,768 + -0.3 632,768 + -2.1 632,768 + +0.3 632,768 + -0.3 632,768 + -1.3 632,768 + +0.1 632,768 + -0.4 632,768 + +0.6 632,768 + -0.9 632,768 + +0.6 632,768 + -0.6 632,768 + +1.1 632,768 + +0.1 632,768 + -2.5 632,768 + +1.6 632,768 + -0.4 632,768 + +2.7 632,768 + +2.5 632,768 + -0.0 632,768 + -1.8 632,768 + +0.3 632,768 + +0.6 632,768 + +1.1 632,768 + +0.8 632,768 + +2.1 632,768 + +0.2 632,768 + +1.9 632,768 + -2.1 632,768 + +0.7 632,768 + -0.3 632,768 + -1.2 632,768 + +0.6 632,768 + -2.0 632,768 + +0.1 632,768 + +0.7 632,768 + +0.1 632,768 + +0.5 632,768 + -2.2 632,768 + -0.1 632,768 + -1.3 632,768 + +0.4 632,768 + +1.8 632,768 + +0.7 632,768 + +0.9 632,768 + -1.1 632,768 + +3.2 632,768 + -1.6 632,768 + +0.6 632,768 + -2.7 632,768 + -0.6 632,768 + +0.3 632,768 + -0.4 632,768 + -1.1 632,768 + +0.5 632,768 + -1.4 632,768 + +1.7 632,768 + +0.7 632,768 + +0.3 632,768 + -1.1 632,768 + +0.0 632,768 + +2.3 632,768 + +1.5 632,768 + -1.3 632,768 + +1.7 632,768 + +2.0 632,768 + +1.3 632,768 + -0.9 632,768 + +1.1 632,768 + -0.9 632,768 + +3.9 632,768 + -1.6 632,768 + -0.2 632,768 + +2.4 632,768 + +0.5 632,768 + +1.8 632,768 + +1.0 632,768 + +0.6 632,768 + -1.7 632,768 + -1.0 632,768 + +1.7 632,768 + -1.1 632,768 + -0.9 632,768 + -2.0 632,768 + +1.4 632,774 - +1.7 632,776 + -0.9 632,776 + +0.1 632,776 - +0.5 632,776 - -2.0 632,776 - -0.3 632,776 - +0.1 632,776 - +1.7 632,776 - +1.4 632,776 - +0.3 632,776 - +1.1 632,776 - -2.1 632,776 - +0.1 632,776 - -1.3 632,776 - -1.7 632,776 - +1.7 632,776 - -2.2 632,776 - -1.7 632,776 - -1.6 632,776 - -0.1 632,776 - +0.6 632,776 - -1.9 632,776 - +1.7 632,776 - -1.9 632,776 - +4.0 632,776 - -0.3 632,776 - -1.1 632,776 - +2.0 632,776 - +0.4 632,776 - +0.9 632,776 - -0.3 632,776 - -0.7 632,776 - -1.9 632,776 - -1.4 632,776 - +1.7 632,776 - +1.1 632,776 - +1.5 632,776 - +1.7 632,776 - +0.6 632,776 - -1.6 632,776 - +0.1 632,776 - -0.6 632,776 - +1.5 632,776 - -1.9 632,776 - -2.3 632,776 - -2.4 632,776 - +0.7 632,776 - +0.1 632,776 - -0.1 632,776 - -0.5 632,776 - +1.1 632,776 - +1.7 632,776 - +2.1 632,776 - +2.7 632,776 - +1.4 632,776 - +1.0 632,776 - +0.1 632,776 - +1.5 632,776 - -0.6 632,776 - +0.9 632,784 - +0.1 632,784 - +2.2 632,784 - -0.9 632,784 - +2.0 632,784 - +0.9 632,785 - -0.4 632,786 - +1.4 632,812 + +0.4 632,812 + -0.8 632,905 - -1.3 632,910 + -0.3 632,936 + +0.8 632,936 + +2.5 632,938 + -2.4 632,945 - -0.6 632,960 + PGA1_c06190 0.12 -2.4 632,966 - PGA1_c06190 0.13 +0.5 632,968 + PGA1_c06190 0.14 -0.1 632,976 - PGA1_c06190 0.15 -2.0 633,002 + PGA1_c06190 0.21 -0.9 633,010 - PGA1_c06190 0.22 -1.1 633,023 + PGA1_c06190 0.25 -2.0 633,026 - PGA1_c06190 0.26 +1.1 633,026 - PGA1_c06190 0.26 -1.7 633,039 + PGA1_c06190 0.28 -0.0 633,042 - PGA1_c06190 0.29 +2.7 633,103 - PGA1_c06190 0.41 -1.6 633,121 + PGA1_c06190 0.45 -2.0 633,137 + PGA1_c06190 0.48 +4.2 633,184 - PGA1_c06190 0.58 -0.1 633,201 + PGA1_c06190 0.61 +0.9 633,201 + PGA1_c06190 0.61 +0.1 633,201 + PGA1_c06190 0.61 -1.1 633,220 + PGA1_c06190 0.65 +0.1 633,220 + PGA1_c06190 0.65 +0.9 633,222 + PGA1_c06190 0.65 +2.0 633,228 - PGA1_c06190 0.67 -0.9 633,257 - PGA1_c06190 0.73 +0.9 633,444 + +1.3 633,476 + -1.1 633,484 - +0.1 633,565 - PGA1_c06200 0.17 -0.6 633,610 - PGA1_c06200 0.24 +0.1 633,695 - PGA1_c06200 0.38 +2.1 633,705 + PGA1_c06200 0.40 +2.1 633,713 - PGA1_c06200 0.41 +0.1 633,731 + PGA1_c06200 0.44 +1.5 633,830 - PGA1_c06200 0.59 -0.6 633,857 + PGA1_c06200 0.64 +0.3 633,880 + PGA1_c06200 0.67 +0.7 633,890 + PGA1_c06200 0.69 +1.7 634,051 - -1.3 634,074 + +0.7 634,111 - -1.9 634,240 + PGA1_c06210 0.20 +0.5 634,414 - PGA1_c06210 0.44 -1.1 634,438 + PGA1_c06210 0.47 -2.4 634,456 - PGA1_c06210 0.50 +2.0 634,491 - PGA1_c06210 0.55 +0.9 634,583 + PGA1_c06210 0.67 -0.5 634,679 - PGA1_c06210 0.81 -1.7 634,733 + PGA1_c06210 0.88 -0.0 634,733 + PGA1_c06210 0.88 +0.8 634,779 + +1.2 634,834 - +0.5 634,853 + -0.3 634,853 + +0.7 634,861 - +1.3 634,935 + +2.9 634,974 - +0.6 634,976 + -0.6 634,976 + +2.0 635,018 + -0.9 635,034 + +0.8
Or see this region's nucleotide sequence