Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g17 and HP15_p42g18 are separated by 50 nucleotides HP15_p42g18 and HP15_p42g19 overlap by 1 nucleotides HP15_p42g19 and HP15_p42g20 overlap by 1 nucleotides
HP15_p42g17: HP15_p42g17 - traN-like protein, at 11,174 to 12,502
_p42g17
HP15_p42g18: HP15_p42g18 - traM-like protein, at 12,553 to 12,990
_p42g18
HP15_p42g19: HP15_p42g19 - transfer origin protein, TraL, at 12,990 to 13,715
_p42g19
HP15_p42g20: HP15_p42g20 - TraK-like protein of DNA transfer, at 13,715 to 14,146
_p42g20
Position (kb) 12
13 Strain fitness (log2 ratio) -2
-1
0
1
2 at 11.571 kb on + strand, within HP15_p42g17 at 11.689 kb on - strand, within HP15_p42g17 at 11.722 kb on + strand, within HP15_p42g17 at 11.966 kb on + strand, within HP15_p42g17 at 11.982 kb on + strand, within HP15_p42g17 at 11.990 kb on - strand, within HP15_p42g17 at 12.022 kb on + strand, within HP15_p42g17 at 12.050 kb on - strand, within HP15_p42g17 at 12.146 kb on - strand, within HP15_p42g17 at 12.190 kb on + strand, within HP15_p42g17 at 12.190 kb on + strand, within HP15_p42g17 at 12.205 kb on - strand, within HP15_p42g17 at 12.212 kb on + strand, within HP15_p42g17 at 12.222 kb on + strand, within HP15_p42g17 at 12.265 kb on - strand, within HP15_p42g17 at 12.268 kb on + strand, within HP15_p42g17 at 12.268 kb on + strand, within HP15_p42g17 at 12.268 kb on + strand, within HP15_p42g17 at 12.268 kb on + strand, within HP15_p42g17 at 12.268 kb on + strand, within HP15_p42g17 at 12.276 kb on - strand, within HP15_p42g17 at 12.276 kb on - strand, within HP15_p42g17 at 12.305 kb on - strand, within HP15_p42g17 at 12.318 kb on + strand, within HP15_p42g17 at 12.365 kb on - strand, within HP15_p42g17 at 12.374 kb on + strand at 12.392 kb on - strand at 12.450 kb on + strand at 12.475 kb on - strand at 12.479 kb on + strand at 12.487 kb on - strand at 12.502 kb on - strand at 12.502 kb on - strand at 12.627 kb on + strand, within HP15_p42g18 at 12.627 kb on + strand, within HP15_p42g18 at 12.646 kb on - strand, within HP15_p42g18 at 12.685 kb on - strand, within HP15_p42g18 at 12.809 kb on - strand, within HP15_p42g18 at 12.879 kb on + strand, within HP15_p42g18 at 12.933 kb on + strand, within HP15_p42g18 at 12.933 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.941 kb on - strand, within HP15_p42g18 at 12.943 kb on + strand, within HP15_p42g18 at 12.998 kb on - strand at 13.008 kb on + strand at 13.140 kb on + strand, within HP15_p42g19 at 13.244 kb on + strand, within HP15_p42g19 at 13.255 kb on + strand, within HP15_p42g19 at 13.255 kb on + strand, within HP15_p42g19 at 13.257 kb on - strand, within HP15_p42g19 at 13.295 kb on + strand, within HP15_p42g19 at 13.349 kb on + strand, within HP15_p42g19 at 13.441 kb on + strand, within HP15_p42g19 at 13.540 kb on + strand, within HP15_p42g19 at 13.565 kb on + strand, within HP15_p42g19 at 13.574 kb on + strand, within HP15_p42g19 at 13.623 kb on - strand, within HP15_p42g19 at 13.638 kb on + strand, within HP15_p42g19 at 13.764 kb on + strand, within HP15_p42g20
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 11,571 + HP15_p42g17 0.30 +0.9 11,689 - HP15_p42g17 0.39 +0.2 11,722 + HP15_p42g17 0.41 -0.3 11,966 + HP15_p42g17 0.60 +0.1 11,982 + HP15_p42g17 0.61 +0.2 11,990 - HP15_p42g17 0.61 -0.3 12,022 + HP15_p42g17 0.64 +1.5 12,050 - HP15_p42g17 0.66 +0.2 12,146 - HP15_p42g17 0.73 +0.0 12,190 + HP15_p42g17 0.76 +0.3 12,190 + HP15_p42g17 0.76 +0.2 12,205 - HP15_p42g17 0.78 -0.6 12,212 + HP15_p42g17 0.78 -0.1 12,222 + HP15_p42g17 0.79 +0.4 12,265 - HP15_p42g17 0.82 -0.3 12,268 + HP15_p42g17 0.82 +1.0 12,268 + HP15_p42g17 0.82 +0.7 12,268 + HP15_p42g17 0.82 +1.1 12,268 + HP15_p42g17 0.82 +0.1 12,268 + HP15_p42g17 0.82 +1.8 12,276 - HP15_p42g17 0.83 +1.6 12,276 - HP15_p42g17 0.83 -0.0 12,305 - HP15_p42g17 0.85 +2.2 12,318 + HP15_p42g17 0.86 -0.2 12,365 - HP15_p42g17 0.90 -1.1 12,374 + -0.8 12,392 - +1.2 12,450 + +0.3 12,475 - -0.3 12,479 + -0.7 12,487 - +0.2 12,502 - +0.3 12,502 - -0.7 12,627 + HP15_p42g18 0.17 -1.4 12,627 + HP15_p42g18 0.17 -0.5 12,646 - HP15_p42g18 0.21 -1.8 12,685 - HP15_p42g18 0.30 -0.1 12,809 - HP15_p42g18 0.58 -0.5 12,879 + HP15_p42g18 0.74 -0.6 12,933 + HP15_p42g18 0.87 +0.1 12,933 + HP15_p42g18 0.87 -0.9 12,935 + HP15_p42g18 0.87 -2.1 12,935 + HP15_p42g18 0.87 -0.9 12,935 + HP15_p42g18 0.87 -1.3 12,935 + HP15_p42g18 0.87 +0.2 12,941 - HP15_p42g18 0.89 +0.1 12,943 + HP15_p42g18 0.89 +0.6 12,998 - -0.6 13,008 + +0.5 13,140 + HP15_p42g19 0.21 +0.5 13,244 + HP15_p42g19 0.35 +0.7 13,255 + HP15_p42g19 0.37 +0.0 13,255 + HP15_p42g19 0.37 -0.9 13,257 - HP15_p42g19 0.37 -1.0 13,295 + HP15_p42g19 0.42 +1.4 13,349 + HP15_p42g19 0.49 -0.7 13,441 + HP15_p42g19 0.62 +0.1 13,540 + HP15_p42g19 0.76 -0.8 13,565 + HP15_p42g19 0.79 +0.9 13,574 + HP15_p42g19 0.80 +0.4 13,623 - HP15_p42g19 0.87 -0.5 13,638 + HP15_p42g19 0.89 +2.2 13,764 + HP15_p42g20 0.11 +0.9
Or see this region's nucleotide sequence