Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00540

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00520 and PGA1_78p00530 are separated by 3 nucleotidesPGA1_78p00530 and PGA1_78p00540 are separated by 200 nucleotidesPGA1_78p00540 and PGA1_78p00550 are separated by 118 nucleotidesPGA1_78p00550 and PGA1_78p00560 overlap by 4 nucleotidesPGA1_78p00560 and PGA1_78p00570 are separated by 60 nucleotides PGA1_78p00520: PGA1_78p00520 - putative secretion protein, HylD family, at 66,326 to 67,732 _78p00520 PGA1_78p00530: PGA1_78p00530 - putative outer membrane protein, at 67,736 to 68,488 _78p00530 PGA1_78p00540: PGA1_78p00540 - hypothetical protein, at 68,689 to 69,441 _78p00540 PGA1_78p00550: PGA1_78p00550 - putative transcriptional regulator, ArsR family, at 69,560 to 69,922 _78p00550 PGA1_78p00560: PGA1_78p00560 - Uncharacterized conserved protein, at 69,919 to 70,332 _78p00560 PGA1_78p00570: PGA1_78p00570 - hypothetical protein, at 70,393 to 71,322 _78p00570 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 67.695 kb on + strandat 67.743 kb on + strandat 67.753 kb on + strandat 67.753 kb on + strandat 67.761 kb on - strandat 68.674 kb on - strandat 68.728 kb on + strandat 68.864 kb on + strand, within PGA1_78p00540at 68.867 kb on - strand, within PGA1_78p00540at 68.878 kb on - strand, within PGA1_78p00540at 68.929 kb on - strand, within PGA1_78p00540at 69.046 kb on + strand, within PGA1_78p00540at 69.111 kb on - strand, within PGA1_78p00540at 69.213 kb on + strand, within PGA1_78p00540at 69.969 kb on - strand, within PGA1_78p00560at 69.977 kb on + strand, within PGA1_78p00560at 69.980 kb on - strand, within PGA1_78p00560at 69.985 kb on - strand, within PGA1_78p00560at 70.023 kb on + strand, within PGA1_78p00560at 70.113 kb on + strand, within PGA1_78p00560

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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67,695 + +1.8
67,743 + +4.0
67,753 + +2.1
67,753 + -0.8
67,761 - +3.1
68,674 - -1.2
68,728 + -1.8
68,864 + PGA1_78p00540 0.23 -2.0
68,867 - PGA1_78p00540 0.24 -0.8
68,878 - PGA1_78p00540 0.25 -0.2
68,929 - PGA1_78p00540 0.32 -0.8
69,046 + PGA1_78p00540 0.47 -1.2
69,111 - PGA1_78p00540 0.56 +0.8
69,213 + PGA1_78p00540 0.70 +2.4
69,969 - PGA1_78p00560 0.12 -1.5
69,977 + PGA1_78p00560 0.14 +0.2
69,980 - PGA1_78p00560 0.15 -0.2
69,985 - PGA1_78p00560 0.16 +1.1
70,023 + PGA1_78p00560 0.25 -0.7
70,113 + PGA1_78p00560 0.47 +0.8

Or see this region's nucleotide sequence