Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01360 and PGA1_262p01370 are separated by 90 nucleotides PGA1_262p01370 and PGA1_262p01380 overlap by 4 nucleotides
PGA1_262p01360: PGA1_262p01360 - transcriptional regulator, LysR family, at 146,433 to 147,374
_262p01360
PGA1_262p01370: PGA1_262p01370 - putative dioxygenase, at 147,465 to 148,619
_262p01370
PGA1_262p01380: PGA1_262p01380 - aldehyde dehydrogenase, at 148,616 to 150,067
_262p01380
Position (kb) 147
148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 146.498 kb on + strand at 146.597 kb on + strand, within PGA1_262p01360 at 146.597 kb on + strand, within PGA1_262p01360 at 146.597 kb on + strand, within PGA1_262p01360 at 146.682 kb on - strand, within PGA1_262p01360 at 146.775 kb on - strand, within PGA1_262p01360 at 146.849 kb on - strand, within PGA1_262p01360 at 146.849 kb on - strand, within PGA1_262p01360 at 146.862 kb on + strand, within PGA1_262p01360 at 146.870 kb on - strand, within PGA1_262p01360 at 147.213 kb on - strand, within PGA1_262p01360 at 147.495 kb on - strand at 147.503 kb on + strand at 147.533 kb on + strand at 147.533 kb on + strand at 147.541 kb on - strand at 147.628 kb on - strand, within PGA1_262p01370 at 147.690 kb on + strand, within PGA1_262p01370 at 147.712 kb on + strand, within PGA1_262p01370 at 147.778 kb on + strand, within PGA1_262p01370 at 147.786 kb on - strand, within PGA1_262p01370 at 147.846 kb on + strand, within PGA1_262p01370 at 147.859 kb on - strand, within PGA1_262p01370 at 147.893 kb on - strand, within PGA1_262p01370 at 148.068 kb on - strand, within PGA1_262p01370 at 148.111 kb on - strand, within PGA1_262p01370 at 148.119 kb on + strand, within PGA1_262p01370 at 148.121 kb on - strand, within PGA1_262p01370 at 148.177 kb on + strand, within PGA1_262p01370 at 148.192 kb on + strand, within PGA1_262p01370 at 148.304 kb on + strand, within PGA1_262p01370 at 148.379 kb on - strand, within PGA1_262p01370 at 148.441 kb on - strand, within PGA1_262p01370 at 148.578 kb on - strand at 148.643 kb on + strand at 148.765 kb on - strand, within PGA1_262p01380 at 148.775 kb on - strand, within PGA1_262p01380 at 148.791 kb on + strand, within PGA1_262p01380 at 149.019 kb on + strand, within PGA1_262p01380 at 149.019 kb on + strand, within PGA1_262p01380 at 149.103 kb on - strand, within PGA1_262p01380 at 149.117 kb on + strand, within PGA1_262p01380 at 149.124 kb on - strand, within PGA1_262p01380 at 149.125 kb on - strand, within PGA1_262p01380 at 149.471 kb on + strand, within PGA1_262p01380 at 149.536 kb on - strand, within PGA1_262p01380 at 149.536 kb on - strand, within PGA1_262p01380
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 146,498 + +1.3 146,597 + PGA1_262p01360 0.17 -2.4 146,597 + PGA1_262p01360 0.17 -0.3 146,597 + PGA1_262p01360 0.17 +2.0 146,682 - PGA1_262p01360 0.26 -0.0 146,775 - PGA1_262p01360 0.36 +0.6 146,849 - PGA1_262p01360 0.44 -0.8 146,849 - PGA1_262p01360 0.44 -1.0 146,862 + PGA1_262p01360 0.46 +1.0 146,870 - PGA1_262p01360 0.46 +2.1 147,213 - PGA1_262p01360 0.83 -2.3 147,495 - -2.4 147,503 + -1.6 147,533 + +0.9 147,533 + -1.3 147,541 - -0.2 147,628 - PGA1_262p01370 0.14 -0.1 147,690 + PGA1_262p01370 0.19 -2.8 147,712 + PGA1_262p01370 0.21 +0.4 147,778 + PGA1_262p01370 0.27 -2.2 147,786 - PGA1_262p01370 0.28 -1.4 147,846 + PGA1_262p01370 0.33 -3.2 147,859 - PGA1_262p01370 0.34 -0.0 147,893 - PGA1_262p01370 0.37 -0.3 148,068 - PGA1_262p01370 0.52 -2.7 148,111 - PGA1_262p01370 0.56 +0.6 148,119 + PGA1_262p01370 0.57 -1.0 148,121 - PGA1_262p01370 0.57 -0.4 148,177 + PGA1_262p01370 0.62 -0.7 148,192 + PGA1_262p01370 0.63 +0.3 148,304 + PGA1_262p01370 0.73 +1.3 148,379 - PGA1_262p01370 0.79 -0.8 148,441 - PGA1_262p01370 0.85 -0.4 148,578 - +1.2 148,643 + -3.4 148,765 - PGA1_262p01380 0.10 -2.5 148,775 - PGA1_262p01380 0.11 +1.0 148,791 + PGA1_262p01380 0.12 -0.3 149,019 + PGA1_262p01380 0.28 -1.4 149,019 + PGA1_262p01380 0.28 +1.4 149,103 - PGA1_262p01380 0.34 -1.0 149,117 + PGA1_262p01380 0.35 -0.8 149,124 - PGA1_262p01380 0.35 +1.2 149,125 - PGA1_262p01380 0.35 +2.0 149,471 + PGA1_262p01380 0.59 -0.0 149,536 - PGA1_262p01380 0.63 -0.1 149,536 - PGA1_262p01380 0.63 -0.0
Or see this region's nucleotide sequence