Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3383 and HP15_3384 are separated by 41 nucleotides HP15_3384 and HP15_3385 are separated by 152 nucleotides HP15_3385 and HP15_3386 are separated by 18 nucleotides
HP15_3383: HP15_3383 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 3,551,562 to 3,552,857
_3383
HP15_3384: HP15_3384 - HIT (histidine triad) family protein, at 3,552,899 to 3,553,264
_3384
HP15_3385: HP15_3385 - phosphate uptake regulator, PhoU, at 3,553,417 to 3,554,154
_3385
HP15_3386: HP15_3386 - phosphate ABC transporter, ATPase subunit, at 3,554,173 to 3,555,051
_3386
Position (kb)
3552
3553
3554 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3552.801 kb on - strand at 3552.849 kb on - strand at 3552.979 kb on - strand, within HP15_3384 at 3552.980 kb on - strand, within HP15_3384 at 3553.086 kb on - strand, within HP15_3384 at 3553.151 kb on + strand, within HP15_3384 at 3553.220 kb on + strand, within HP15_3384 at 3553.220 kb on + strand, within HP15_3384 at 3553.228 kb on - strand at 3553.228 kb on - strand at 3553.278 kb on + strand at 3553.320 kb on + strand at 3553.361 kb on - strand at 3553.398 kb on + strand at 3553.410 kb on + strand at 3554.164 kb on + strand at 3554.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 3,552,801 - +1.3 3,552,849 - -0.2 3,552,979 - HP15_3384 0.22 +0.2 3,552,980 - HP15_3384 0.22 -1.1 3,553,086 - HP15_3384 0.51 -0.9 3,553,151 + HP15_3384 0.69 +0.8 3,553,220 + HP15_3384 0.88 -1.3 3,553,220 + HP15_3384 0.88 -0.5 3,553,228 - -0.4 3,553,228 - +0.2 3,553,278 + +0.1 3,553,320 + -0.2 3,553,361 - +3.1 3,553,398 + -0.2 3,553,410 + -0.9 3,554,164 + -0.3 3,554,172 - +0.1
Or see this region's nucleotide sequence