Strain Fitness in Marinobacter adhaerens HP15 around HP15_33

Experiment: m.b. Chloramphenicol 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_32 and HP15_33 are separated by 4 nucleotidesHP15_33 and HP15_34 are separated by 137 nucleotidesHP15_34 and HP15_35 are separated by 2 nucleotides HP15_32: HP15_32 - glyoxalase/bleomycin resistance protein/dioxygenase, at 36,821 to 37,774 _32 HP15_33: HP15_33 - fumarylacetoacetate (FAA) hydrolase, at 37,779 to 38,681 _33 HP15_34: HP15_34 - transcriptional regulator, IclR family, at 38,819 to 39,613 _34 HP15_35: HP15_35 - thiolase, at 39,616 to 40,806 _35 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 36.864 kb on - strandat 36.876 kb on + strandat 36.885 kb on - strandat 36.885 kb on - strandat 36.900 kb on + strandat 36.900 kb on + strandat 36.908 kb on - strandat 36.908 kb on - strandat 36.908 kb on - strandat 36.908 kb on - strandat 36.978 kb on + strand, within HP15_32at 37.166 kb on + strand, within HP15_32at 37.211 kb on + strand, within HP15_32at 37.219 kb on - strand, within HP15_32at 37.219 kb on - strand, within HP15_32at 37.219 kb on - strand, within HP15_32at 37.246 kb on + strand, within HP15_32at 37.265 kb on + strand, within HP15_32at 37.298 kb on - strand, within HP15_32at 37.355 kb on - strand, within HP15_32at 37.369 kb on + strand, within HP15_32at 37.369 kb on + strand, within HP15_32at 37.377 kb on - strand, within HP15_32at 37.379 kb on + strand, within HP15_32at 37.412 kb on + strand, within HP15_32at 37.461 kb on + strand, within HP15_32at 37.469 kb on - strand, within HP15_32at 37.485 kb on + strand, within HP15_32at 37.617 kb on + strand, within HP15_32at 37.658 kb on - strand, within HP15_32at 37.658 kb on - strand, within HP15_32at 37.669 kb on + strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.677 kb on - strand, within HP15_32at 37.714 kb on - strandat 37.827 kb on + strandat 37.835 kb on - strandat 37.843 kb on - strandat 37.878 kb on + strand, within HP15_33at 37.887 kb on + strand, within HP15_33at 37.887 kb on + strand, within HP15_33at 37.887 kb on + strand, within HP15_33at 37.895 kb on - strand, within HP15_33at 37.937 kb on + strand, within HP15_33at 37.937 kb on + strand, within HP15_33at 37.937 kb on + strand, within HP15_33at 37.940 kb on - strand, within HP15_33at 37.945 kb on - strand, within HP15_33at 37.945 kb on - strand, within HP15_33at 38.002 kb on + strand, within HP15_33at 38.021 kb on + strand, within HP15_33at 38.060 kb on + strand, within HP15_33at 38.074 kb on - strand, within HP15_33at 38.103 kb on + strand, within HP15_33at 38.108 kb on + strand, within HP15_33at 38.108 kb on + strand, within HP15_33at 38.116 kb on - strand, within HP15_33at 38.121 kb on - strand, within HP15_33at 38.168 kb on - strand, within HP15_33at 38.168 kb on - strand, within HP15_33at 38.168 kb on - strand, within HP15_33at 38.228 kb on + strand, within HP15_33at 38.300 kb on + strand, within HP15_33at 38.364 kb on - strand, within HP15_33at 38.394 kb on - strand, within HP15_33at 38.397 kb on + strand, within HP15_33at 38.405 kb on + strand, within HP15_33at 38.410 kb on + strand, within HP15_33at 38.418 kb on + strand, within HP15_33at 38.424 kb on - strand, within HP15_33at 38.499 kb on + strand, within HP15_33at 38.721 kb on + strandat 38.726 kb on + strandat 39.007 kb on - strand, within HP15_34at 39.027 kb on - strand, within HP15_34at 39.043 kb on + strand, within HP15_34at 39.043 kb on + strand, within HP15_34at 39.063 kb on + strand, within HP15_34at 39.071 kb on - strand, within HP15_34at 39.071 kb on - strand, within HP15_34at 39.078 kb on + strand, within HP15_34at 39.086 kb on - strand, within HP15_34at 39.165 kb on + strand, within HP15_34at 39.173 kb on - strand, within HP15_34at 39.173 kb on - strand, within HP15_34at 39.175 kb on - strand, within HP15_34at 39.211 kb on - strand, within HP15_34at 39.228 kb on + strand, within HP15_34at 39.331 kb on + strand, within HP15_34at 39.339 kb on - strand, within HP15_34at 39.552 kb on + strandat 39.595 kb on + strandat 39.607 kb on + strandat 39.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml
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36,864 - -1.4
36,876 + -0.5
36,885 - -2.2
36,885 - -0.5
36,900 + -0.7
36,900 + -0.1
36,908 - +0.3
36,908 - -0.3
36,908 - +0.7
36,908 - -2.3
36,978 + HP15_32 0.16 -0.5
37,166 + HP15_32 0.36 +2.6
37,211 + HP15_32 0.41 +0.7
37,219 - HP15_32 0.42 +0.3
37,219 - HP15_32 0.42 -0.2
37,219 - HP15_32 0.42 -0.1
37,246 + HP15_32 0.45 +0.3
37,265 + HP15_32 0.47 -0.1
37,298 - HP15_32 0.50 +0.2
37,355 - HP15_32 0.56 -0.6
37,369 + HP15_32 0.57 +0.4
37,369 + HP15_32 0.57 +0.5
37,377 - HP15_32 0.58 -0.2
37,379 + HP15_32 0.58 +1.6
37,412 + HP15_32 0.62 -0.1
37,461 + HP15_32 0.67 +0.3
37,469 - HP15_32 0.68 -1.1
37,485 + HP15_32 0.70 -1.7
37,617 + HP15_32 0.83 -0.4
37,658 - HP15_32 0.88 +0.3
37,658 - HP15_32 0.88 -0.4
37,669 + HP15_32 0.89 +0.5
37,677 - HP15_32 0.90 +1.0
37,677 - HP15_32 0.90 +0.1
37,677 - HP15_32 0.90 -0.3
37,677 - HP15_32 0.90 -1.9
37,677 - HP15_32 0.90 -0.2
37,714 - +0.1
37,827 + -0.1
37,835 - -0.8
37,843 - -0.3
37,878 + HP15_33 0.11 -0.5
37,887 + HP15_33 0.12 -1.3
37,887 + HP15_33 0.12 -0.5
37,887 + HP15_33 0.12 +0.1
37,895 - HP15_33 0.13 +0.3
37,937 + HP15_33 0.17 +0.3
37,937 + HP15_33 0.17 -0.8
37,937 + HP15_33 0.17 -0.6
37,940 - HP15_33 0.18 -0.3
37,945 - HP15_33 0.18 -0.8
37,945 - HP15_33 0.18 -1.8
38,002 + HP15_33 0.25 -1.1
38,021 + HP15_33 0.27 -0.7
38,060 + HP15_33 0.31 +0.7
38,074 - HP15_33 0.33 -0.1
38,103 + HP15_33 0.36 -1.0
38,108 + HP15_33 0.36 +1.1
38,108 + HP15_33 0.36 +0.3
38,116 - HP15_33 0.37 -1.1
38,121 - HP15_33 0.38 -0.1
38,168 - HP15_33 0.43 +0.4
38,168 - HP15_33 0.43 -0.9
38,168 - HP15_33 0.43 +1.9
38,228 + HP15_33 0.50 +0.2
38,300 + HP15_33 0.58 +0.4
38,364 - HP15_33 0.65 +0.7
38,394 - HP15_33 0.68 -0.6
38,397 + HP15_33 0.68 -0.8
38,405 + HP15_33 0.69 -1.6
38,410 + HP15_33 0.70 -0.7
38,418 + HP15_33 0.71 -1.4
38,424 - HP15_33 0.71 +0.4
38,499 + HP15_33 0.80 -0.1
38,721 + +0.3
38,726 + -1.1
39,007 - HP15_34 0.24 -0.3
39,027 - HP15_34 0.26 -0.4
39,043 + HP15_34 0.28 -0.5
39,043 + HP15_34 0.28 -0.7
39,063 + HP15_34 0.31 -0.7
39,071 - HP15_34 0.32 +1.3
39,071 - HP15_34 0.32 -1.2
39,078 + HP15_34 0.33 -0.7
39,086 - HP15_34 0.34 -0.3
39,165 + HP15_34 0.44 -1.1
39,173 - HP15_34 0.45 -0.5
39,173 - HP15_34 0.45 -2.4
39,175 - HP15_34 0.45 -0.5
39,211 - HP15_34 0.49 +0.0
39,228 + HP15_34 0.51 -1.3
39,331 + HP15_34 0.64 -0.7
39,339 - HP15_34 0.65 -0.6
39,552 + +0.9
39,595 + +1.9
39,607 + -2.6
39,615 - +0.8

Or see this region's nucleotide sequence