Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_301 and HP15_302 are separated by 21 nucleotides HP15_302 and HP15_303 are separated by 148 nucleotides HP15_303 and HP15_304 are separated by 86 nucleotides HP15_304 and HP15_305 are separated by 172 nucleotides
HP15_301: HP15_301 - conserved hypothetical protein, at 291,999 to 292,865
_301
HP15_302: HP15_302 - protein containing pseudouridine synthase domain, at 292,887 to 293,708
_302
HP15_303: HP15_303 - guanylate kinase, at 293,857 to 294,489
_303
HP15_304: HP15_304 - DNA-directed RNA polymerase subunit omega, at 294,576 to 294,788
_304
HP15_305: HP15_305 - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 294,961 to 297,102
_305
Position (kb) 293
294
295 Strain fitness (log2 ratio) -2
-1
0
1 at 292.903 kb on - strand at 292.939 kb on + strand at 292.944 kb on + strand at 292.944 kb on + strand at 292.944 kb on + strand at 292.952 kb on - strand at 292.983 kb on + strand, within HP15_302 at 293.116 kb on + strand, within HP15_302 at 293.134 kb on - strand, within HP15_302 at 293.233 kb on + strand, within HP15_302 at 293.266 kb on - strand, within HP15_302 at 293.317 kb on + strand, within HP15_302 at 293.425 kb on + strand, within HP15_302 at 293.440 kb on + strand, within HP15_302 at 293.440 kb on + strand, within HP15_302 at 293.448 kb on - strand, within HP15_302 at 293.448 kb on - strand, within HP15_302 at 293.553 kb on + strand, within HP15_302 at 293.664 kb on + strand at 293.678 kb on + strand at 293.734 kb on - strand at 293.745 kb on - strand at 293.759 kb on + strand at 293.759 kb on + strand at 293.759 kb on + strand at 293.760 kb on - strand at 293.767 kb on - strand at 293.769 kb on - strand at 293.769 kb on - strand at 293.838 kb on + strand at 293.838 kb on + strand at 294.764 kb on + strand, within HP15_304
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 292,903 - -0.2 292,939 + -1.1 292,944 + -1.6 292,944 + +0.1 292,944 + -0.2 292,952 - -0.1 292,983 + HP15_302 0.12 +0.2 293,116 + HP15_302 0.28 -0.3 293,134 - HP15_302 0.30 +0.9 293,233 + HP15_302 0.42 +0.7 293,266 - HP15_302 0.46 -0.8 293,317 + HP15_302 0.52 -0.0 293,425 + HP15_302 0.65 -0.1 293,440 + HP15_302 0.67 +1.5 293,440 + HP15_302 0.67 +0.1 293,448 - HP15_302 0.68 -0.8 293,448 - HP15_302 0.68 -2.1 293,553 + HP15_302 0.81 -0.4 293,664 + +0.8 293,678 + -2.0 293,734 - +0.7 293,745 - +1.2 293,759 + +0.1 293,759 + -0.7 293,759 + +0.4 293,760 - +0.6 293,767 - +0.9 293,769 - -1.2 293,769 - -0.2 293,838 + +0.0 293,838 + +1.0 294,764 + HP15_304 0.88 +0.3
Or see this region's nucleotide sequence