Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28950

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c28940 and PGA1_c28950 overlap by 27 nucleotidesPGA1_c28950 and PGA1_c28960 overlap by 4 nucleotidesPGA1_c28960 and PGA1_c28970 are separated by 58 nucleotides PGA1_c28940: PGA1_c28940 - transglycosylase SLT domain-containing protein, at 3,035,525 to 3,037,483 _c28940 PGA1_c28950: PGA1_c28950 - putative integral membrane protein, at 3,037,457 to 3,038,374 _c28950 PGA1_c28960: PGA1_c28960 - tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC-like protein, at 3,038,371 to 3,039,069 _c28960 PGA1_c28970: PGA1_c28970 - putative FAD dependent oxidoreductase, at 3,039,128 to 3,040,195 _c28970 Position (kb) 3037 3038 3039Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3036.457 kb on - strand, within PGA1_c28940at 3036.461 kb on - strand, within PGA1_c28940at 3036.470 kb on + strand, within PGA1_c28940at 3036.476 kb on - strand, within PGA1_c28940at 3036.563 kb on + strand, within PGA1_c28940at 3036.563 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strandat 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.568 kb on + strand, within PGA1_c28940at 3036.571 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strandat 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.576 kb on - strand, within PGA1_c28940at 3036.673 kb on - strand, within PGA1_c28940at 3036.673 kb on - strand, within PGA1_c28940at 3036.673 kb on - strand, within PGA1_c28940at 3036.930 kb on - strand, within PGA1_c28940at 3036.979 kb on - strand, within PGA1_c28940at 3037.002 kb on + strand, within PGA1_c28940at 3037.164 kb on + strand, within PGA1_c28940at 3037.172 kb on - strand, within PGA1_c28940at 3037.175 kb on + strand, within PGA1_c28940at 3037.183 kb on - strand, within PGA1_c28940at 3037.186 kb on + strand, within PGA1_c28940at 3037.273 kb on + strand, within PGA1_c28940at 3037.273 kb on + strand, within PGA1_c28940at 3037.281 kb on - strand, within PGA1_c28940at 3037.300 kb on + strandat 3037.349 kb on + strandat 3037.352 kb on - strandat 3037.463 kb on - strandat 3037.469 kb on - strandat 3037.483 kb on + strandat 3037.500 kb on - strandat 3037.583 kb on - strand, within PGA1_c28950at 3037.585 kb on + strand, within PGA1_c28950at 3037.601 kb on + strand, within PGA1_c28950at 3037.601 kb on + strand, within PGA1_c28950at 3037.609 kb on - strand, within PGA1_c28950at 3037.609 kb on - strand, within PGA1_c28950at 3037.614 kb on - strand, within PGA1_c28950at 3037.619 kb on - strand, within PGA1_c28950at 3037.624 kb on - strand, within PGA1_c28950at 3037.658 kb on + strand, within PGA1_c28950at 3037.721 kb on + strand, within PGA1_c28950at 3037.775 kb on - strand, within PGA1_c28950at 3037.838 kb on + strand, within PGA1_c28950at 3037.838 kb on + strand, within PGA1_c28950at 3037.846 kb on - strand, within PGA1_c28950at 3037.969 kb on + strand, within PGA1_c28950at 3037.979 kb on + strand, within PGA1_c28950at 3037.987 kb on - strand, within PGA1_c28950at 3037.989 kb on + strand, within PGA1_c28950at 3038.034 kb on + strand, within PGA1_c28950at 3038.166 kb on - strand, within PGA1_c28950at 3038.177 kb on - strand, within PGA1_c28950at 3038.209 kb on + strand, within PGA1_c28950at 3038.209 kb on + strand, within PGA1_c28950at 3038.209 kb on + strand, within PGA1_c28950at 3038.209 kb on + strand, within PGA1_c28950at 3038.215 kb on - strand, within PGA1_c28950at 3038.217 kb on + strand, within PGA1_c28950at 3038.217 kb on - strand, within PGA1_c28950at 3038.217 kb on - strand, within PGA1_c28950at 3038.217 kb on - strand, within PGA1_c28950at 3038.217 kb on - strand, within PGA1_c28950at 3038.225 kb on - strand, within PGA1_c28950at 3038.225 kb on - strand, within PGA1_c28950at 3038.225 kb on - strand, within PGA1_c28950at 3038.255 kb on - strand, within PGA1_c28950at 3038.285 kb on + strandat 3038.293 kb on - strandat 3038.357 kb on - strandat 3038.453 kb on - strand, within PGA1_c28960at 3038.514 kb on - strand, within PGA1_c28960at 3038.565 kb on + strand, within PGA1_c28960at 3038.573 kb on - strand, within PGA1_c28960at 3038.673 kb on + strand, within PGA1_c28960at 3038.673 kb on + strand, within PGA1_c28960at 3038.673 kb on + strand, within PGA1_c28960at 3038.673 kb on + strand, within PGA1_c28960at 3038.681 kb on - strand, within PGA1_c28960at 3038.681 kb on - strand, within PGA1_c28960at 3038.681 kb on - strand, within PGA1_c28960at 3038.683 kb on + strand, within PGA1_c28960at 3038.683 kb on + strand, within PGA1_c28960at 3038.691 kb on - strand, within PGA1_c28960at 3038.731 kb on + strand, within PGA1_c28960at 3038.783 kb on - strand, within PGA1_c28960at 3038.791 kb on + strand, within PGA1_c28960at 3038.865 kb on - strand, within PGA1_c28960at 3038.865 kb on - strand, within PGA1_c28960at 3038.900 kb on + strand, within PGA1_c28960at 3038.966 kb on + strand, within PGA1_c28960at 3038.966 kb on + strand, within PGA1_c28960at 3039.051 kb on - strandat 3039.080 kb on + strandat 3039.093 kb on + strandat 3039.101 kb on - strandat 3039.109 kb on - strandat 3039.109 kb on - strandat 3039.111 kb on + strandat 3039.158 kb on + strandat 3039.182 kb on + strandat 3039.189 kb on + strandat 3039.189 kb on - strandat 3039.190 kb on - strandat 3039.190 kb on - strandat 3039.190 kb on - strandat 3039.190 kb on - strandat 3039.190 kb on - strandat 3039.294 kb on + strand, within PGA1_c28970

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,036,457 - PGA1_c28940 0.48 -0.3
3,036,461 - PGA1_c28940 0.48 -1.3
3,036,470 + PGA1_c28940 0.48 -0.6
3,036,476 - PGA1_c28940 0.49 +0.7
3,036,563 + PGA1_c28940 0.53 -1.5
3,036,563 + PGA1_c28940 0.53 +1.7
3,036,568 + PGA1_c28940 0.53 +0.7
3,036,568 + PGA1_c28940 0.53 +3.1
3,036,568 + PGA1_c28940 0.53 +0.7
3,036,568 + PGA1_c28940 0.53 +0.7
3,036,568 + PGA1_c28940 0.53 -1.9
3,036,568 + PGA1_c28940 0.53 -0.1
3,036,568 + PGA1_c28940 0.53 +0.2
3,036,568 + PGA1_c28940 0.53 -2.0
3,036,568 + PGA1_c28940 0.53 -0.3
3,036,568 + +0.1
3,036,568 + PGA1_c28940 0.53 +1.0
3,036,568 + PGA1_c28940 0.53 +1.4
3,036,568 + PGA1_c28940 0.53 -0.6
3,036,568 + PGA1_c28940 0.53 +0.7
3,036,568 + PGA1_c28940 0.53 +1.7
3,036,568 + PGA1_c28940 0.53 -1.3
3,036,568 + PGA1_c28940 0.53 +2.3
3,036,568 + PGA1_c28940 0.53 -1.3
3,036,568 + PGA1_c28940 0.53 +2.0
3,036,568 + PGA1_c28940 0.53 -2.8
3,036,568 + PGA1_c28940 0.53 +1.3
3,036,568 + PGA1_c28940 0.53 -0.3
3,036,568 + PGA1_c28940 0.53 +0.7
3,036,568 + PGA1_c28940 0.53 +0.4
3,036,568 + PGA1_c28940 0.53 +1.2
3,036,568 + PGA1_c28940 0.53 +0.5
3,036,568 + PGA1_c28940 0.53 +2.2
3,036,568 + PGA1_c28940 0.53 +1.7
3,036,568 + PGA1_c28940 0.53 +1.7
3,036,571 - PGA1_c28940 0.53 +1.7
3,036,576 - PGA1_c28940 0.54 +0.1
3,036,576 - PGA1_c28940 0.54 -1.3
3,036,576 - PGA1_c28940 0.54 -1.1
3,036,576 - PGA1_c28940 0.54 +1.1
3,036,576 - PGA1_c28940 0.54 +0.5
3,036,576 - PGA1_c28940 0.54 +1.7
3,036,576 - PGA1_c28940 0.54 +0.4
3,036,576 - PGA1_c28940 0.54 +2.3
3,036,576 - PGA1_c28940 0.54 +2.1
3,036,576 - PGA1_c28940 0.54 -0.3
3,036,576 - PGA1_c28940 0.54 -0.6
3,036,576 - PGA1_c28940 0.54 -2.2
3,036,576 - PGA1_c28940 0.54 -2.0
3,036,576 - PGA1_c28940 0.54 +1.4
3,036,576 - +4.3
3,036,576 - PGA1_c28940 0.54 -0.3
3,036,576 - PGA1_c28940 0.54 +1.2
3,036,576 - PGA1_c28940 0.54 +1.4
3,036,576 - PGA1_c28940 0.54 +1.2
3,036,576 - PGA1_c28940 0.54 +0.8
3,036,576 - PGA1_c28940 0.54 +1.1
3,036,576 - PGA1_c28940 0.54 +2.3
3,036,576 - PGA1_c28940 0.54 -0.9
3,036,576 - PGA1_c28940 0.54 -0.3
3,036,576 - PGA1_c28940 0.54 +1.8
3,036,673 - PGA1_c28940 0.59 +2.7
3,036,673 - PGA1_c28940 0.59 +1.9
3,036,673 - PGA1_c28940 0.59 +2.3
3,036,930 - PGA1_c28940 0.72 -2.0
3,036,979 - PGA1_c28940 0.74 -1.3
3,037,002 + PGA1_c28940 0.75 +0.1
3,037,164 + PGA1_c28940 0.84 +1.3
3,037,172 - PGA1_c28940 0.84 -0.6
3,037,175 + PGA1_c28940 0.84 +2.3
3,037,183 - PGA1_c28940 0.85 +2.3
3,037,186 + PGA1_c28940 0.85 +0.3
3,037,273 + PGA1_c28940 0.89 +0.5
3,037,273 + PGA1_c28940 0.89 +0.1
3,037,281 - PGA1_c28940 0.90 +0.1
3,037,300 + -1.1
3,037,349 + +0.7
3,037,352 - -1.3
3,037,463 - -1.1
3,037,469 - +0.7
3,037,483 + +2.1
3,037,500 - +2.1
3,037,583 - PGA1_c28950 0.14 +0.1
3,037,585 + PGA1_c28950 0.14 +0.7
3,037,601 + PGA1_c28950 0.16 +1.4
3,037,601 + PGA1_c28950 0.16 -1.9
3,037,609 - PGA1_c28950 0.17 +1.1
3,037,609 - PGA1_c28950 0.17 +1.3
3,037,614 - PGA1_c28950 0.17 +1.7
3,037,619 - PGA1_c28950 0.18 -0.9
3,037,624 - PGA1_c28950 0.18 +1.5
3,037,658 + PGA1_c28950 0.22 -0.8
3,037,721 + PGA1_c28950 0.29 +0.7
3,037,775 - PGA1_c28950 0.35 +0.3
3,037,838 + PGA1_c28950 0.42 -1.1
3,037,838 + PGA1_c28950 0.42 +0.4
3,037,846 - PGA1_c28950 0.42 +0.4
3,037,969 + PGA1_c28950 0.56 +0.9
3,037,979 + PGA1_c28950 0.57 +0.9
3,037,987 - PGA1_c28950 0.58 +1.4
3,037,989 + PGA1_c28950 0.58 +3.3
3,038,034 + PGA1_c28950 0.63 +3.5
3,038,166 - PGA1_c28950 0.77 +2.0
3,038,177 - PGA1_c28950 0.78 +0.7
3,038,209 + PGA1_c28950 0.82 +2.1
3,038,209 + PGA1_c28950 0.82 -1.6
3,038,209 + PGA1_c28950 0.82 +0.4
3,038,209 + PGA1_c28950 0.82 +1.7
3,038,215 - PGA1_c28950 0.83 -1.6
3,038,217 + PGA1_c28950 0.83 +2.7
3,038,217 - PGA1_c28950 0.83 +1.5
3,038,217 - PGA1_c28950 0.83 +0.7
3,038,217 - PGA1_c28950 0.83 +1.5
3,038,217 - PGA1_c28950 0.83 +0.1
3,038,225 - PGA1_c28950 0.84 +0.1
3,038,225 - PGA1_c28950 0.84 -0.8
3,038,225 - PGA1_c28950 0.84 +0.1
3,038,255 - PGA1_c28950 0.87 +0.6
3,038,285 + -0.9
3,038,293 - -1.1
3,038,357 - -0.0
3,038,453 - PGA1_c28960 0.12 +0.5
3,038,514 - PGA1_c28960 0.20 +2.0
3,038,565 + PGA1_c28960 0.28 +1.3
3,038,573 - PGA1_c28960 0.29 -0.6
3,038,673 + PGA1_c28960 0.43 +0.1
3,038,673 + PGA1_c28960 0.43 +2.3
3,038,673 + PGA1_c28960 0.43 -1.9
3,038,673 + PGA1_c28960 0.43 +1.4
3,038,681 - PGA1_c28960 0.44 -0.3
3,038,681 - PGA1_c28960 0.44 -0.9
3,038,681 - PGA1_c28960 0.44 -1.3
3,038,683 + PGA1_c28960 0.45 -0.6
3,038,683 + PGA1_c28960 0.45 -0.3
3,038,691 - PGA1_c28960 0.46 +0.7
3,038,731 + PGA1_c28960 0.52 +1.1
3,038,783 - PGA1_c28960 0.59 -1.3
3,038,791 + PGA1_c28960 0.60 +4.1
3,038,865 - PGA1_c28960 0.71 +0.1
3,038,865 - PGA1_c28960 0.71 +2.6
3,038,900 + PGA1_c28960 0.76 -1.2
3,038,966 + PGA1_c28960 0.85 +1.2
3,038,966 + PGA1_c28960 0.85 +2.0
3,039,051 - -2.1
3,039,080 + +2.5
3,039,093 + +1.3
3,039,101 - -0.0
3,039,109 - +0.9
3,039,109 - +0.7
3,039,111 + +2.4
3,039,158 + +2.0
3,039,182 + +1.5
3,039,189 + +1.4
3,039,189 - +1.7
3,039,190 - +1.8
3,039,190 - +1.7
3,039,190 - +1.7
3,039,190 - -0.3
3,039,190 - -1.6
3,039,294 + PGA1_c28970 0.16 -2.0

Or see this region's nucleotide sequence