Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2753 and HP15_2754 are separated by 227 nucleotides HP15_2754 and HP15_2755 overlap by 4 nucleotides HP15_2755 and HP15_2756 are separated by 10 nucleotides
HP15_2753: HP15_2753 - transcriptional regulator protein, LysR family, at 2,908,044 to 2,908,904
_2753
HP15_2754: HP15_2754 - conserved hypothetical protein, at 2,909,132 to 2,909,371
_2754
HP15_2755: HP15_2755 - homocysteine S-methyltransferase family protein, at 2,909,368 to 2,910,273
_2755
HP15_2756: HP15_2756 - metallo-beta-lactamase superfamily protein, at 2,910,284 to 2,912,314
_2756
Position (kb)
2909
2910 Strain fitness (log2 ratio)
-1
0
1
2 at 2908.226 kb on + strand, within HP15_2753 at 2908.246 kb on + strand, within HP15_2753 at 2908.260 kb on + strand, within HP15_2753 at 2908.272 kb on + strand, within HP15_2753 at 2908.296 kb on - strand, within HP15_2753 at 2908.426 kb on - strand, within HP15_2753 at 2908.464 kb on + strand, within HP15_2753 at 2908.472 kb on - strand, within HP15_2753 at 2908.473 kb on - strand, within HP15_2753 at 2908.473 kb on - strand, within HP15_2753 at 2908.796 kb on + strand, within HP15_2753 at 2908.877 kb on + strand at 2909.159 kb on - strand, within HP15_2754 at 2909.338 kb on + strand, within HP15_2754 at 2909.622 kb on + strand, within HP15_2755 at 2909.622 kb on + strand, within HP15_2755 at 2909.623 kb on - strand, within HP15_2755 at 2909.734 kb on + strand, within HP15_2755 at 2909.747 kb on - strand, within HP15_2755 at 2909.791 kb on - strand, within HP15_2755 at 2909.796 kb on - strand, within HP15_2755 at 2909.796 kb on - strand, within HP15_2755 at 2909.883 kb on - strand, within HP15_2755 at 2909.937 kb on + strand, within HP15_2755 at 2909.948 kb on + strand, within HP15_2755 at 2910.021 kb on + strand, within HP15_2755 at 2910.021 kb on - strand, within HP15_2755 at 2910.114 kb on + strand, within HP15_2755 at 2910.122 kb on - strand, within HP15_2755 at 2910.122 kb on - strand, within HP15_2755 at 2910.277 kb on + strand at 2910.282 kb on + strand at 2910.282 kb on + strand at 2910.285 kb on - strand at 2910.303 kb on + strand at 2910.315 kb on + strand at 2910.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 2,908,226 + HP15_2753 0.21 -1.4 2,908,246 + HP15_2753 0.23 -0.2 2,908,260 + HP15_2753 0.25 +0.6 2,908,272 + HP15_2753 0.26 +0.2 2,908,296 - HP15_2753 0.29 +0.3 2,908,426 - HP15_2753 0.44 -0.0 2,908,464 + HP15_2753 0.49 -1.7 2,908,472 - HP15_2753 0.50 -0.2 2,908,473 - HP15_2753 0.50 +0.4 2,908,473 - HP15_2753 0.50 -0.1 2,908,796 + HP15_2753 0.87 +0.2 2,908,877 + +0.3 2,909,159 - HP15_2754 0.11 -1.1 2,909,338 + HP15_2754 0.86 -0.4 2,909,622 + HP15_2755 0.28 +0.4 2,909,622 + HP15_2755 0.28 -0.5 2,909,623 - HP15_2755 0.28 -0.7 2,909,734 + HP15_2755 0.40 -0.2 2,909,747 - HP15_2755 0.42 -0.8 2,909,791 - HP15_2755 0.47 -1.4 2,909,796 - HP15_2755 0.47 -0.2 2,909,796 - HP15_2755 0.47 +1.0 2,909,883 - HP15_2755 0.57 +0.2 2,909,937 + HP15_2755 0.63 +0.2 2,909,948 + HP15_2755 0.64 -0.7 2,910,021 + HP15_2755 0.72 +0.2 2,910,021 - HP15_2755 0.72 -0.2 2,910,114 + HP15_2755 0.82 -0.7 2,910,122 - HP15_2755 0.83 -1.1 2,910,122 - HP15_2755 0.83 -0.2 2,910,277 + -0.6 2,910,282 + +0.3 2,910,282 + +0.4 2,910,285 - +0.2 2,910,303 + +0.1 2,910,315 + -0.0 2,910,316 - +2.5
Or see this region's nucleotide sequence