Strain Fitness in Marinobacter adhaerens HP15 around HP15_2754

Experiment: m.b. Chloramphenicol 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2753 and HP15_2754 are separated by 227 nucleotidesHP15_2754 and HP15_2755 overlap by 4 nucleotidesHP15_2755 and HP15_2756 are separated by 10 nucleotides HP15_2753: HP15_2753 - transcriptional regulator protein, LysR family, at 2,908,044 to 2,908,904 _2753 HP15_2754: HP15_2754 - conserved hypothetical protein, at 2,909,132 to 2,909,371 _2754 HP15_2755: HP15_2755 - homocysteine S-methyltransferase family protein, at 2,909,368 to 2,910,273 _2755 HP15_2756: HP15_2756 - metallo-beta-lactamase superfamily protein, at 2,910,284 to 2,912,314 _2756 Position (kb) 2909 2910Strain fitness (log2 ratio) -1 0 1 2at 2908.226 kb on + strand, within HP15_2753at 2908.246 kb on + strand, within HP15_2753at 2908.260 kb on + strand, within HP15_2753at 2908.272 kb on + strand, within HP15_2753at 2908.296 kb on - strand, within HP15_2753at 2908.426 kb on - strand, within HP15_2753at 2908.464 kb on + strand, within HP15_2753at 2908.472 kb on - strand, within HP15_2753at 2908.473 kb on - strand, within HP15_2753at 2908.473 kb on - strand, within HP15_2753at 2908.796 kb on + strand, within HP15_2753at 2908.877 kb on + strandat 2909.159 kb on - strand, within HP15_2754at 2909.338 kb on + strand, within HP15_2754at 2909.622 kb on + strand, within HP15_2755at 2909.622 kb on + strand, within HP15_2755at 2909.623 kb on - strand, within HP15_2755at 2909.734 kb on + strand, within HP15_2755at 2909.747 kb on - strand, within HP15_2755at 2909.791 kb on - strand, within HP15_2755at 2909.796 kb on - strand, within HP15_2755at 2909.796 kb on - strand, within HP15_2755at 2909.883 kb on - strand, within HP15_2755at 2909.937 kb on + strand, within HP15_2755at 2909.948 kb on + strand, within HP15_2755at 2910.021 kb on + strand, within HP15_2755at 2910.021 kb on - strand, within HP15_2755at 2910.114 kb on + strand, within HP15_2755at 2910.122 kb on - strand, within HP15_2755at 2910.122 kb on - strand, within HP15_2755at 2910.277 kb on + strandat 2910.282 kb on + strandat 2910.282 kb on + strandat 2910.285 kb on - strandat 2910.303 kb on + strandat 2910.315 kb on + strandat 2910.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml
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2,908,226 + HP15_2753 0.21 -1.4
2,908,246 + HP15_2753 0.23 -0.2
2,908,260 + HP15_2753 0.25 +0.6
2,908,272 + HP15_2753 0.26 +0.2
2,908,296 - HP15_2753 0.29 +0.3
2,908,426 - HP15_2753 0.44 -0.0
2,908,464 + HP15_2753 0.49 -1.7
2,908,472 - HP15_2753 0.50 -0.2
2,908,473 - HP15_2753 0.50 +0.4
2,908,473 - HP15_2753 0.50 -0.1
2,908,796 + HP15_2753 0.87 +0.2
2,908,877 + +0.3
2,909,159 - HP15_2754 0.11 -1.1
2,909,338 + HP15_2754 0.86 -0.4
2,909,622 + HP15_2755 0.28 +0.4
2,909,622 + HP15_2755 0.28 -0.5
2,909,623 - HP15_2755 0.28 -0.7
2,909,734 + HP15_2755 0.40 -0.2
2,909,747 - HP15_2755 0.42 -0.8
2,909,791 - HP15_2755 0.47 -1.4
2,909,796 - HP15_2755 0.47 -0.2
2,909,796 - HP15_2755 0.47 +1.0
2,909,883 - HP15_2755 0.57 +0.2
2,909,937 + HP15_2755 0.63 +0.2
2,909,948 + HP15_2755 0.64 -0.7
2,910,021 + HP15_2755 0.72 +0.2
2,910,021 - HP15_2755 0.72 -0.2
2,910,114 + HP15_2755 0.82 -0.7
2,910,122 - HP15_2755 0.83 -1.1
2,910,122 - HP15_2755 0.83 -0.2
2,910,277 + -0.6
2,910,282 + +0.3
2,910,282 + +0.4
2,910,285 - +0.2
2,910,303 + +0.1
2,910,315 + -0.0
2,910,316 - +2.5

Or see this region's nucleotide sequence