Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2739 and HP15_2740 are separated by 471 nucleotides HP15_2740 and HP15_2741 are separated by 89 nucleotides
HP15_2739: HP15_2739 - DNA-3-methyladenine glycosidase II, at 2,891,346 to 2,891,975
_2739
HP15_2740: HP15_2740 - membrane protein containing DUF6, transmembrane, at 2,892,447 to 2,893,343
_2740
HP15_2741: HP15_2741 - transcriptional regulator, AraC family protein, at 2,893,433 to 2,894,359
_2741
Position (kb)
2892
2893
2894 Strain fitness (log2 ratio)
-1
0
1 at 2891.620 kb on + strand, within HP15_2739 at 2891.687 kb on - strand, within HP15_2739 at 2891.756 kb on + strand, within HP15_2739 at 2891.787 kb on + strand, within HP15_2739 at 2891.787 kb on + strand, within HP15_2739 at 2891.812 kb on - strand, within HP15_2739 at 2891.911 kb on - strand, within HP15_2739 at 2891.970 kb on - strand at 2892.023 kb on + strand at 2892.041 kb on - strand at 2892.085 kb on + strand at 2892.136 kb on + strand at 2892.144 kb on - strand at 2892.156 kb on + strand at 2892.225 kb on - strand at 2892.237 kb on - strand at 2892.237 kb on - strand at 2892.270 kb on + strand at 2892.307 kb on - strand at 2892.317 kb on - strand at 2892.425 kb on - strand at 2892.442 kb on - strand at 2892.614 kb on + strand, within HP15_2740 at 2892.726 kb on - strand, within HP15_2740 at 2892.766 kb on + strand, within HP15_2740 at 2892.786 kb on + strand, within HP15_2740 at 2892.817 kb on - strand, within HP15_2740 at 2892.926 kb on - strand, within HP15_2740 at 2893.000 kb on + strand, within HP15_2740 at 2893.008 kb on - strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.092 kb on + strand, within HP15_2740 at 2893.100 kb on - strand, within HP15_2740 at 2893.100 kb on - strand, within HP15_2740 at 2893.138 kb on - strand, within HP15_2740 at 2893.266 kb on - strand at 2893.275 kb on + strand at 2893.278 kb on - strand at 2893.303 kb on + strand at 2893.318 kb on - strand at 2893.354 kb on + strand at 2893.436 kb on - strand at 2893.464 kb on + strand at 2893.622 kb on + strand, within HP15_2741 at 2893.622 kb on + strand, within HP15_2741 at 2893.643 kb on - strand, within HP15_2741 at 2893.654 kb on + strand, within HP15_2741 at 2893.662 kb on - strand, within HP15_2741 at 2893.664 kb on - strand, within HP15_2741 at 2893.686 kb on - strand, within HP15_2741 at 2893.729 kb on + strand, within HP15_2741 at 2893.914 kb on + strand, within HP15_2741 at 2894.006 kb on + strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.164 kb on - strand, within HP15_2741 at 2894.164 kb on - strand, within HP15_2741 at 2894.183 kb on + strand, within HP15_2741 at 2894.196 kb on + strand, within HP15_2741 at 2894.273 kb on - strand at 2894.279 kb on + strand at 2894.319 kb on + strand at 2894.341 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 2,891,620 + HP15_2739 0.43 -0.0 2,891,687 - HP15_2739 0.54 -0.7 2,891,756 + HP15_2739 0.65 +0.0 2,891,787 + HP15_2739 0.70 +0.7 2,891,787 + HP15_2739 0.70 +0.7 2,891,812 - HP15_2739 0.74 -0.5 2,891,911 - HP15_2739 0.90 -0.3 2,891,970 - -0.4 2,892,023 + -0.6 2,892,041 - -0.2 2,892,085 + -1.2 2,892,136 + +0.6 2,892,144 - -0.3 2,892,156 + +0.2 2,892,225 - +0.5 2,892,237 - +0.5 2,892,237 - -0.0 2,892,270 + +0.1 2,892,307 - +1.2 2,892,317 - -0.2 2,892,425 - -0.2 2,892,442 - +0.2 2,892,614 + HP15_2740 0.19 -1.0 2,892,726 - HP15_2740 0.31 +0.5 2,892,766 + HP15_2740 0.36 +1.2 2,892,786 + HP15_2740 0.38 -1.7 2,892,817 - HP15_2740 0.41 -0.9 2,892,926 - HP15_2740 0.53 -0.1 2,893,000 + HP15_2740 0.62 -1.5 2,893,008 - HP15_2740 0.63 -0.8 2,893,092 + HP15_2740 0.72 -0.7 2,893,092 + HP15_2740 0.72 -0.6 2,893,092 + HP15_2740 0.72 +1.4 2,893,092 + HP15_2740 0.72 +0.2 2,893,092 + HP15_2740 0.72 -0.8 2,893,100 - HP15_2740 0.73 +0.3 2,893,100 - HP15_2740 0.73 -1.3 2,893,138 - HP15_2740 0.77 +0.1 2,893,266 - +0.2 2,893,275 + +0.7 2,893,278 - -0.9 2,893,303 + -0.0 2,893,318 - +0.7 2,893,354 + -0.1 2,893,436 - +0.3 2,893,464 + -0.4 2,893,622 + HP15_2741 0.20 +1.4 2,893,622 + HP15_2741 0.20 +0.8 2,893,643 - HP15_2741 0.23 +1.1 2,893,654 + HP15_2741 0.24 +0.5 2,893,662 - HP15_2741 0.25 -1.5 2,893,664 - HP15_2741 0.25 -0.3 2,893,686 - HP15_2741 0.27 -0.3 2,893,729 + HP15_2741 0.32 +0.7 2,893,914 + HP15_2741 0.52 -0.9 2,894,006 + HP15_2741 0.62 -0.8 2,894,080 - HP15_2741 0.70 -0.4 2,894,080 - HP15_2741 0.70 -0.7 2,894,080 - HP15_2741 0.70 -1.1 2,894,164 - HP15_2741 0.79 -1.7 2,894,164 - HP15_2741 0.79 -0.2 2,894,183 + HP15_2741 0.81 -0.3 2,894,196 + HP15_2741 0.82 -1.5 2,894,273 - -0.4 2,894,279 + +0.2 2,894,319 + -0.1 2,894,341 + +0.9
Or see this region's nucleotide sequence