Strain Fitness in Marinobacter adhaerens HP15 around HP15_2740

Experiment: m.b. Chloramphenicol 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2739 and HP15_2740 are separated by 471 nucleotidesHP15_2740 and HP15_2741 are separated by 89 nucleotides HP15_2739: HP15_2739 - DNA-3-methyladenine glycosidase II, at 2,891,346 to 2,891,975 _2739 HP15_2740: HP15_2740 - membrane protein containing DUF6, transmembrane, at 2,892,447 to 2,893,343 _2740 HP15_2741: HP15_2741 - transcriptional regulator, AraC family protein, at 2,893,433 to 2,894,359 _2741 Position (kb) 2892 2893 2894Strain fitness (log2 ratio) -1 0 1at 2891.620 kb on + strand, within HP15_2739at 2891.687 kb on - strand, within HP15_2739at 2891.756 kb on + strand, within HP15_2739at 2891.787 kb on + strand, within HP15_2739at 2891.787 kb on + strand, within HP15_2739at 2891.812 kb on - strand, within HP15_2739at 2891.911 kb on - strand, within HP15_2739at 2891.970 kb on - strandat 2892.023 kb on + strandat 2892.041 kb on - strandat 2892.085 kb on + strandat 2892.136 kb on + strandat 2892.144 kb on - strandat 2892.156 kb on + strandat 2892.225 kb on - strandat 2892.237 kb on - strandat 2892.237 kb on - strandat 2892.270 kb on + strandat 2892.307 kb on - strandat 2892.317 kb on - strandat 2892.425 kb on - strandat 2892.442 kb on - strandat 2892.614 kb on + strand, within HP15_2740at 2892.726 kb on - strand, within HP15_2740at 2892.766 kb on + strand, within HP15_2740at 2892.786 kb on + strand, within HP15_2740at 2892.817 kb on - strand, within HP15_2740at 2892.926 kb on - strand, within HP15_2740at 2893.000 kb on + strand, within HP15_2740at 2893.008 kb on - strand, within HP15_2740at 2893.092 kb on + strand, within HP15_2740at 2893.092 kb on + strand, within HP15_2740at 2893.092 kb on + strand, within HP15_2740at 2893.092 kb on + strand, within HP15_2740at 2893.092 kb on + strand, within HP15_2740at 2893.100 kb on - strand, within HP15_2740at 2893.100 kb on - strand, within HP15_2740at 2893.138 kb on - strand, within HP15_2740at 2893.266 kb on - strandat 2893.275 kb on + strandat 2893.278 kb on - strandat 2893.303 kb on + strandat 2893.318 kb on - strandat 2893.354 kb on + strandat 2893.436 kb on - strandat 2893.464 kb on + strandat 2893.622 kb on + strand, within HP15_2741at 2893.622 kb on + strand, within HP15_2741at 2893.643 kb on - strand, within HP15_2741at 2893.654 kb on + strand, within HP15_2741at 2893.662 kb on - strand, within HP15_2741at 2893.664 kb on - strand, within HP15_2741at 2893.686 kb on - strand, within HP15_2741at 2893.729 kb on + strand, within HP15_2741at 2893.914 kb on + strand, within HP15_2741at 2894.006 kb on + strand, within HP15_2741at 2894.080 kb on - strand, within HP15_2741at 2894.080 kb on - strand, within HP15_2741at 2894.080 kb on - strand, within HP15_2741at 2894.164 kb on - strand, within HP15_2741at 2894.164 kb on - strand, within HP15_2741at 2894.183 kb on + strand, within HP15_2741at 2894.196 kb on + strand, within HP15_2741at 2894.273 kb on - strandat 2894.279 kb on + strandat 2894.319 kb on + strandat 2894.341 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml
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2,891,620 + HP15_2739 0.43 -0.0
2,891,687 - HP15_2739 0.54 -0.7
2,891,756 + HP15_2739 0.65 +0.0
2,891,787 + HP15_2739 0.70 +0.7
2,891,787 + HP15_2739 0.70 +0.7
2,891,812 - HP15_2739 0.74 -0.5
2,891,911 - HP15_2739 0.90 -0.3
2,891,970 - -0.4
2,892,023 + -0.6
2,892,041 - -0.2
2,892,085 + -1.2
2,892,136 + +0.6
2,892,144 - -0.3
2,892,156 + +0.2
2,892,225 - +0.5
2,892,237 - +0.5
2,892,237 - -0.0
2,892,270 + +0.1
2,892,307 - +1.2
2,892,317 - -0.2
2,892,425 - -0.2
2,892,442 - +0.2
2,892,614 + HP15_2740 0.19 -1.0
2,892,726 - HP15_2740 0.31 +0.5
2,892,766 + HP15_2740 0.36 +1.2
2,892,786 + HP15_2740 0.38 -1.7
2,892,817 - HP15_2740 0.41 -0.9
2,892,926 - HP15_2740 0.53 -0.1
2,893,000 + HP15_2740 0.62 -1.5
2,893,008 - HP15_2740 0.63 -0.8
2,893,092 + HP15_2740 0.72 -0.7
2,893,092 + HP15_2740 0.72 -0.6
2,893,092 + HP15_2740 0.72 +1.4
2,893,092 + HP15_2740 0.72 +0.2
2,893,092 + HP15_2740 0.72 -0.8
2,893,100 - HP15_2740 0.73 +0.3
2,893,100 - HP15_2740 0.73 -1.3
2,893,138 - HP15_2740 0.77 +0.1
2,893,266 - +0.2
2,893,275 + +0.7
2,893,278 - -0.9
2,893,303 + -0.0
2,893,318 - +0.7
2,893,354 + -0.1
2,893,436 - +0.3
2,893,464 + -0.4
2,893,622 + HP15_2741 0.20 +1.4
2,893,622 + HP15_2741 0.20 +0.8
2,893,643 - HP15_2741 0.23 +1.1
2,893,654 + HP15_2741 0.24 +0.5
2,893,662 - HP15_2741 0.25 -1.5
2,893,664 - HP15_2741 0.25 -0.3
2,893,686 - HP15_2741 0.27 -0.3
2,893,729 + HP15_2741 0.32 +0.7
2,893,914 + HP15_2741 0.52 -0.9
2,894,006 + HP15_2741 0.62 -0.8
2,894,080 - HP15_2741 0.70 -0.4
2,894,080 - HP15_2741 0.70 -0.7
2,894,080 - HP15_2741 0.70 -1.1
2,894,164 - HP15_2741 0.79 -1.7
2,894,164 - HP15_2741 0.79 -0.2
2,894,183 + HP15_2741 0.81 -0.3
2,894,196 + HP15_2741 0.82 -1.5
2,894,273 - -0.4
2,894,279 + +0.2
2,894,319 + -0.1
2,894,341 + +0.9

Or see this region's nucleotide sequence