Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2587 and HP15_2588 are separated by 41 nucleotides HP15_2588 and HP15_2589 are separated by 34 nucleotides HP15_2589 and HP15_2590 overlap by 4 nucleotides HP15_2590 and HP15_2591 overlap by 4 nucleotides HP15_2591 and HP15_2592 are separated by 9 nucleotides HP15_2592 and HP15_2593 overlap by 8 nucleotides
HP15_2587: HP15_2587 - monovalent cation/H+ antiporter subunit A, at 2,736,626 to 2,738,935
_2587
HP15_2588: HP15_2588 - Na+/H+ antiporter MnhB subunit-related protein, at 2,738,977 to 2,739,357
_2588
HP15_2589: HP15_2589 - NADH:ubiquinone/quinone oxidoreductase, chain 4L, at 2,739,392 to 2,739,739
_2589
HP15_2590: HP15_2590 - monovalent cation/H+ antiporter subunit D, at 2,739,736 to 2,741,250
_2590
HP15_2591: HP15_2591 - monovalent cation/H+ antiporter subunit E, at 2,741,247 to 2,741,720
_2591
HP15_2592: HP15_2592 - multiple resistance and pH regulation protein F, at 2,741,730 to 2,742,002
_2592
HP15_2593: HP15_2593 - monovalent cation/proton antiporter, MnhG/PhaG subunit, at 2,741,995 to 2,742,402
_2593
Position (kb)
2739
2740
2741
2742 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2738.744 kb on - strand at 2738.781 kb on + strand at 2738.786 kb on + strand at 2738.794 kb on - strand at 2738.847 kb on - strand at 2738.867 kb on - strand at 2738.915 kb on + strand at 2739.050 kb on + strand, within HP15_2588 at 2739.076 kb on - strand, within HP15_2588 at 2739.207 kb on - strand, within HP15_2588 at 2739.207 kb on - strand, within HP15_2588 at 2739.232 kb on + strand, within HP15_2588 at 2739.254 kb on + strand, within HP15_2588 at 2739.302 kb on - strand, within HP15_2588 at 2739.316 kb on + strand, within HP15_2588 at 2739.406 kb on + strand at 2739.422 kb on - strand at 2739.499 kb on - strand, within HP15_2589 at 2739.615 kb on + strand, within HP15_2589 at 2739.676 kb on - strand, within HP15_2589 at 2739.699 kb on + strand, within HP15_2589 at 2739.792 kb on - strand at 2739.921 kb on + strand, within HP15_2590 at 2739.942 kb on - strand, within HP15_2590 at 2739.944 kb on - strand, within HP15_2590 at 2739.946 kb on + strand, within HP15_2590 at 2739.980 kb on - strand, within HP15_2590 at 2740.028 kb on + strand, within HP15_2590 at 2740.262 kb on + strand, within HP15_2590 at 2740.280 kb on - strand, within HP15_2590 at 2740.318 kb on + strand, within HP15_2590 at 2740.328 kb on + strand, within HP15_2590 at 2740.338 kb on - strand, within HP15_2590 at 2740.346 kb on - strand, within HP15_2590 at 2740.484 kb on + strand, within HP15_2590 at 2740.484 kb on + strand, within HP15_2590 at 2740.499 kb on - strand, within HP15_2590 at 2740.529 kb on - strand, within HP15_2590 at 2740.561 kb on - strand, within HP15_2590 at 2740.563 kb on - strand, within HP15_2590 at 2740.563 kb on - strand, within HP15_2590 at 2740.563 kb on - strand, within HP15_2590 at 2740.671 kb on + strand, within HP15_2590 at 2740.793 kb on + strand, within HP15_2590 at 2740.807 kb on + strand, within HP15_2590 at 2740.911 kb on + strand, within HP15_2590 at 2741.000 kb on - strand, within HP15_2590 at 2741.211 kb on + strand at 2741.258 kb on + strand at 2741.593 kb on + strand, within HP15_2591 at 2741.666 kb on + strand, within HP15_2591 at 2741.674 kb on - strand at 2741.696 kb on - strand at 2741.804 kb on - strand, within HP15_2592 at 2741.809 kb on + strand, within HP15_2592 at 2741.833 kb on - strand, within HP15_2592 at 2741.898 kb on + strand, within HP15_2592 at 2742.151 kb on + strand, within HP15_2593 at 2742.159 kb on - strand, within HP15_2593
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 2,738,744 - +1.1 2,738,781 + +0.9 2,738,786 + -1.3 2,738,794 - -0.1 2,738,847 - +0.1 2,738,867 - -1.1 2,738,915 + -0.8 2,739,050 + HP15_2588 0.19 +0.4 2,739,076 - HP15_2588 0.26 +1.7 2,739,207 - HP15_2588 0.60 -1.4 2,739,207 - HP15_2588 0.60 +2.1 2,739,232 + HP15_2588 0.67 -0.4 2,739,254 + HP15_2588 0.73 +0.1 2,739,302 - HP15_2588 0.85 -0.3 2,739,316 + HP15_2588 0.89 -0.9 2,739,406 + -0.3 2,739,422 - -0.1 2,739,499 - HP15_2589 0.31 -0.8 2,739,615 + HP15_2589 0.64 +1.4 2,739,676 - HP15_2589 0.82 +0.3 2,739,699 + HP15_2589 0.88 -0.6 2,739,792 - +0.5 2,739,921 + HP15_2590 0.12 -0.4 2,739,942 - HP15_2590 0.14 +0.3 2,739,944 - HP15_2590 0.14 -0.1 2,739,946 + HP15_2590 0.14 -0.6 2,739,980 - HP15_2590 0.16 +2.0 2,740,028 + HP15_2590 0.19 -0.4 2,740,262 + HP15_2590 0.35 +0.1 2,740,280 - HP15_2590 0.36 +0.0 2,740,318 + HP15_2590 0.38 -2.0 2,740,328 + HP15_2590 0.39 +0.4 2,740,338 - HP15_2590 0.40 -0.4 2,740,346 - HP15_2590 0.40 -1.0 2,740,484 + HP15_2590 0.49 +1.7 2,740,484 + HP15_2590 0.49 -0.7 2,740,499 - HP15_2590 0.50 +2.5 2,740,529 - HP15_2590 0.52 -0.6 2,740,561 - HP15_2590 0.54 -0.1 2,740,563 - HP15_2590 0.55 +0.3 2,740,563 - HP15_2590 0.55 -0.7 2,740,563 - HP15_2590 0.55 -1.1 2,740,671 + HP15_2590 0.62 +1.3 2,740,793 + HP15_2590 0.70 -0.2 2,740,807 + HP15_2590 0.71 -1.4 2,740,911 + HP15_2590 0.78 -2.1 2,741,000 - HP15_2590 0.83 -0.5 2,741,211 + -0.5 2,741,258 + -0.9 2,741,593 + HP15_2591 0.73 -1.2 2,741,666 + HP15_2591 0.88 -0.9 2,741,674 - +0.1 2,741,696 - -0.5 2,741,804 - HP15_2592 0.27 -0.9 2,741,809 + HP15_2592 0.29 -2.3 2,741,833 - HP15_2592 0.38 +0.7 2,741,898 + HP15_2592 0.62 -0.4 2,742,151 + HP15_2593 0.38 +2.1 2,742,159 - HP15_2593 0.40 -0.1
Or see this region's nucleotide sequence