Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2576 and HP15_2577 are separated by 114 nucleotides HP15_2577 and HP15_2578 are separated by 110 nucleotides HP15_2578 and HP15_2579 are separated by 15 nucleotides
HP15_2576: HP15_2576 - acyl-CoA dehydrogenase domain protein, at 2,724,069 to 2,725,871
_2576
HP15_2577: HP15_2577 - protein containing helix-turn-helix, AraC domain, at 2,725,986 to 2,726,981
_2577
HP15_2578: HP15_2578 - conserved hypothetical protein, at 2,727,092 to 2,727,256
_2578
HP15_2579: HP15_2579 - hemolysin, at 2,727,272 to 2,728,294
_2579
Position (kb)
2725
2726
2727 Strain fitness (log2 ratio)
-1
0
1
2 at 2725.060 kb on - strand, within HP15_2576 at 2725.078 kb on + strand, within HP15_2576 at 2725.142 kb on - strand, within HP15_2576 at 2725.238 kb on - strand, within HP15_2576 at 2725.297 kb on + strand, within HP15_2576 at 2725.305 kb on - strand, within HP15_2576 at 2725.305 kb on - strand, within HP15_2576 at 2725.366 kb on + strand, within HP15_2576 at 2725.382 kb on + strand, within HP15_2576 at 2725.418 kb on - strand, within HP15_2576 at 2725.512 kb on - strand, within HP15_2576 at 2725.520 kb on - strand, within HP15_2576 at 2725.577 kb on + strand, within HP15_2576 at 2725.633 kb on + strand, within HP15_2576 at 2725.708 kb on - strand at 2725.709 kb on - strand at 2725.874 kb on - strand at 2726.027 kb on - strand at 2726.032 kb on - strand at 2726.419 kb on + strand, within HP15_2577 at 2726.512 kb on + strand, within HP15_2577 at 2726.529 kb on - strand, within HP15_2577 at 2726.534 kb on - strand, within HP15_2577 at 2726.679 kb on + strand, within HP15_2577 at 2726.738 kb on + strand, within HP15_2577 at 2726.799 kb on + strand, within HP15_2577 at 2726.942 kb on + strand at 2726.982 kb on + strand at 2726.992 kb on + strand at 2727.079 kb on + strand at 2727.108 kb on + strand at 2727.179 kb on - strand, within HP15_2578 at 2727.258 kb on - strand at 2727.261 kb on + strand at 2727.269 kb on + strand at 2727.308 kb on + strand at 2727.538 kb on - strand, within HP15_2579 at 2727.565 kb on - strand, within HP15_2579 at 2727.570 kb on - strand, within HP15_2579 at 2727.613 kb on + strand, within HP15_2579 at 2727.658 kb on - strand, within HP15_2579 at 2727.663 kb on - strand, within HP15_2579 at 2727.815 kb on - strand, within HP15_2579 at 2727.934 kb on + strand, within HP15_2579
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 2,725,060 - HP15_2576 0.55 -1.0 2,725,078 + HP15_2576 0.56 +0.5 2,725,142 - HP15_2576 0.60 +2.3 2,725,238 - HP15_2576 0.65 -0.0 2,725,297 + HP15_2576 0.68 +0.3 2,725,305 - HP15_2576 0.69 -0.7 2,725,305 - HP15_2576 0.69 -0.5 2,725,366 + HP15_2576 0.72 +0.2 2,725,382 + HP15_2576 0.73 +0.1 2,725,418 - HP15_2576 0.75 +0.5 2,725,512 - HP15_2576 0.80 -0.3 2,725,520 - HP15_2576 0.80 +0.0 2,725,577 + HP15_2576 0.84 +2.0 2,725,633 + HP15_2576 0.87 -1.7 2,725,708 - -0.7 2,725,709 - -1.0 2,725,874 - -0.3 2,726,027 - +0.3 2,726,032 - -0.1 2,726,419 + HP15_2577 0.43 -0.3 2,726,512 + HP15_2577 0.53 +0.1 2,726,529 - HP15_2577 0.55 +0.0 2,726,534 - HP15_2577 0.55 -0.8 2,726,679 + HP15_2577 0.70 +2.3 2,726,738 + HP15_2577 0.76 +0.6 2,726,799 + HP15_2577 0.82 +0.5 2,726,942 + -0.3 2,726,982 + +1.7 2,726,992 + +0.5 2,727,079 + +0.3 2,727,108 + +1.1 2,727,179 - HP15_2578 0.53 +2.3 2,727,258 - -0.3 2,727,261 + +0.8 2,727,269 + -0.7 2,727,308 + -1.2 2,727,538 - HP15_2579 0.26 +0.6 2,727,565 - HP15_2579 0.29 -0.3 2,727,570 - HP15_2579 0.29 -0.8 2,727,613 + HP15_2579 0.33 +0.1 2,727,658 - HP15_2579 0.38 +0.9 2,727,663 - HP15_2579 0.38 -1.0 2,727,815 - HP15_2579 0.53 -0.6 2,727,934 + HP15_2579 0.65 -0.7
Or see this region's nucleotide sequence