Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02670 and PGA1_c02680 are separated by 137 nucleotides PGA1_c02680 and PGA1_c02690 are separated by 436 nucleotides
PGA1_c02670: PGA1_c02670 - quinone oxidoreductase-like protein, at 253,139 to 254,128
_c02670
PGA1_c02680: PGA1_c02680 - tRNA-Gln, at 254,266 to 254,340
_c02680
PGA1_c02690: PGA1_c02690 - Hemolysin-type calcium-binding repeat (2 copies)., at 254,777 to 257,686
_c02690
Position (kb) 254
255 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 253.269 kb on - strand at 253.303 kb on + strand, within PGA1_c02670 at 253.312 kb on + strand, within PGA1_c02670 at 253.312 kb on + strand, within PGA1_c02670 at 253.312 kb on + strand, within PGA1_c02670 at 253.312 kb on + strand, within PGA1_c02670 at 253.312 kb on + strand, within PGA1_c02670 at 253.312 kb on + strand, within PGA1_c02670 at 253.315 kb on - strand, within PGA1_c02670 at 253.317 kb on + strand, within PGA1_c02670 at 253.320 kb on - strand, within PGA1_c02670 at 253.320 kb on - strand, within PGA1_c02670 at 253.328 kb on + strand, within PGA1_c02670 at 253.328 kb on + strand, within PGA1_c02670 at 253.328 kb on + strand, within PGA1_c02670 at 253.344 kb on + strand, within PGA1_c02670 at 253.344 kb on + strand, within PGA1_c02670 at 253.344 kb on + strand, within PGA1_c02670 at 253.344 kb on + strand, within PGA1_c02670 at 253.352 kb on - strand, within PGA1_c02670 at 253.352 kb on - strand, within PGA1_c02670 at 253.352 kb on - strand, within PGA1_c02670 at 253.352 kb on - strand, within PGA1_c02670 at 253.352 kb on - strand, within PGA1_c02670 at 253.352 kb on - strand, within PGA1_c02670 at 253.352 kb on - strand, within PGA1_c02670 at 253.418 kb on + strand, within PGA1_c02670 at 253.483 kb on + strand, within PGA1_c02670 at 253.496 kb on + strand, within PGA1_c02670 at 253.499 kb on - strand, within PGA1_c02670 at 253.503 kb on + strand, within PGA1_c02670 at 253.503 kb on + strand, within PGA1_c02670 at 253.504 kb on - strand, within PGA1_c02670 at 253.511 kb on - strand, within PGA1_c02670 at 253.511 kb on - strand, within PGA1_c02670 at 253.515 kb on + strand, within PGA1_c02670 at 253.515 kb on + strand, within PGA1_c02670 at 253.528 kb on - strand, within PGA1_c02670 at 253.528 kb on - strand, within PGA1_c02670 at 253.537 kb on + strand, within PGA1_c02670 at 253.594 kb on + strand, within PGA1_c02670 at 253.605 kb on + strand, within PGA1_c02670 at 253.608 kb on - strand, within PGA1_c02670 at 253.614 kb on + strand, within PGA1_c02670 at 253.653 kb on + strand, within PGA1_c02670 at 253.664 kb on + strand, within PGA1_c02670 at 253.664 kb on + strand, within PGA1_c02670 at 253.664 kb on + strand, within PGA1_c02670 at 253.668 kb on - strand, within PGA1_c02670 at 253.672 kb on - strand, within PGA1_c02670 at 253.721 kb on + strand, within PGA1_c02670 at 253.726 kb on + strand, within PGA1_c02670 at 253.741 kb on - strand, within PGA1_c02670 at 253.756 kb on + strand, within PGA1_c02670 at 253.756 kb on + strand, within PGA1_c02670 at 253.756 kb on + strand, within PGA1_c02670 at 253.769 kb on + strand, within PGA1_c02670 at 253.791 kb on + strand, within PGA1_c02670 at 253.801 kb on + strand, within PGA1_c02670 at 253.833 kb on - strand, within PGA1_c02670 at 253.890 kb on - strand, within PGA1_c02670 at 253.898 kb on - strand, within PGA1_c02670 at 253.898 kb on - strand, within PGA1_c02670 at 253.938 kb on + strand, within PGA1_c02670 at 253.943 kb on + strand, within PGA1_c02670 at 253.948 kb on + strand, within PGA1_c02670 at 253.948 kb on + strand, within PGA1_c02670 at 253.948 kb on + strand, within PGA1_c02670 at 253.955 kb on - strand, within PGA1_c02670 at 253.955 kb on - strand, within PGA1_c02670 at 253.962 kb on + strand, within PGA1_c02670 at 253.970 kb on + strand, within PGA1_c02670 at 253.970 kb on + strand, within PGA1_c02670 at 253.975 kb on + strand, within PGA1_c02670 at 253.983 kb on - strand, within PGA1_c02670 at 254.026 kb on + strand, within PGA1_c02670 at 254.026 kb on + strand, within PGA1_c02670 at 254.042 kb on + strand at 254.053 kb on + strand at 254.053 kb on + strand at 254.053 kb on + strand at 254.053 kb on + strand at 254.053 kb on + strand at 254.061 kb on + strand at 254.061 kb on + strand at 254.061 kb on - strand at 254.072 kb on - strand at 254.153 kb on - strand at 254.156 kb on + strand at 254.180 kb on + strand at 254.180 kb on + strand at 254.180 kb on + strand at 254.188 kb on - strand at 254.188 kb on - strand at 254.188 kb on - strand at 254.188 kb on - strand at 254.357 kb on - strand at 254.428 kb on + strand at 254.430 kb on - strand at 254.433 kb on - strand at 254.441 kb on - strand at 254.445 kb on + strand at 254.447 kb on - strand at 254.449 kb on + strand at 254.528 kb on - strand at 254.528 kb on - strand at 254.530 kb on - strand at 254.531 kb on - strand at 254.539 kb on + strand at 254.539 kb on + strand at 254.539 kb on + strand at 254.547 kb on - strand at 254.555 kb on + strand at 254.565 kb on + strand at 254.598 kb on + strand at 254.600 kb on + strand at 254.600 kb on + strand at 254.600 kb on + strand at 254.600 kb on + strand at 254.600 kb on + strand at 254.600 kb on + strand at 254.600 kb on + strand at 254.600 kb on + strand at 254.600 kb on + strand at 254.606 kb on + strand at 254.606 kb on + strand at 254.608 kb on - strand at 254.608 kb on - strand at 254.608 kb on - strand at 254.608 kb on - strand at 254.608 kb on - strand at 254.608 kb on - strand at 254.608 kb on - strand at 254.608 kb on - strand at 254.608 kb on - strand at 254.608 kb on - strand at 254.608 kb on - strand at 254.614 kb on - strand at 254.614 kb on - strand at 254.672 kb on + strand at 254.675 kb on - strand at 254.679 kb on - strand at 254.682 kb on - strand at 254.682 kb on - strand at 254.690 kb on - strand at 254.698 kb on + strand at 254.698 kb on + strand at 254.701 kb on - strand at 254.701 kb on - strand at 254.706 kb on - strand at 254.706 kb on - strand at 254.753 kb on - strand at 254.771 kb on - strand at 254.801 kb on - strand at 254.811 kb on - strand at 254.811 kb on - strand at 254.852 kb on + strand at 254.860 kb on - strand at 254.860 kb on - strand at 254.860 kb on - strand at 254.860 kb on - strand at 254.860 kb on - strand at 254.860 kb on - strand at 254.862 kb on + strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.880 kb on - strand at 254.918 kb on + strand at 254.918 kb on + strand at 254.918 kb on + strand at 254.918 kb on + strand at 254.918 kb on + strand at 254.926 kb on - strand at 254.926 kb on - strand at 254.926 kb on - strand at 254.926 kb on - strand at 254.926 kb on - strand at 254.926 kb on - strand at 254.926 kb on - strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.936 kb on - strand at 254.936 kb on - strand at 254.936 kb on - strand at 254.936 kb on - strand at 254.936 kb on - strand at 254.944 kb on + strand at 255.043 kb on - strand at 255.107 kb on - strand, within PGA1_c02690 at 255.144 kb on - strand, within PGA1_c02690 at 255.146 kb on + strand, within PGA1_c02690
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 253,269 - +0.3 253,303 + PGA1_c02670 0.17 -0.7 253,312 + PGA1_c02670 0.17 -1.9 253,312 + PGA1_c02670 0.17 +0.9 253,312 + PGA1_c02670 0.17 -0.7 253,312 + PGA1_c02670 0.17 +1.1 253,312 + PGA1_c02670 0.17 -1.1 253,312 + PGA1_c02670 0.17 +0.8 253,315 - PGA1_c02670 0.18 +1.0 253,317 + PGA1_c02670 0.18 +0.8 253,320 - PGA1_c02670 0.18 +0.2 253,320 - PGA1_c02670 0.18 -1.4 253,328 + PGA1_c02670 0.19 +0.1 253,328 + PGA1_c02670 0.19 +2.6 253,328 + PGA1_c02670 0.19 +1.9 253,344 + PGA1_c02670 0.21 +0.1 253,344 + PGA1_c02670 0.21 -0.6 253,344 + PGA1_c02670 0.21 -0.9 253,344 + PGA1_c02670 0.21 -1.7 253,352 - PGA1_c02670 0.22 -1.8 253,352 - PGA1_c02670 0.22 -0.0 253,352 - PGA1_c02670 0.22 +2.0 253,352 - PGA1_c02670 0.22 +0.6 253,352 - PGA1_c02670 0.22 +1.3 253,352 - PGA1_c02670 0.22 -0.1 253,352 - PGA1_c02670 0.22 -2.0 253,418 + PGA1_c02670 0.28 -2.0 253,483 + PGA1_c02670 0.35 -1.8 253,496 + PGA1_c02670 0.36 -2.8 253,499 - PGA1_c02670 0.36 +0.4 253,503 + PGA1_c02670 0.37 -1.7 253,503 + PGA1_c02670 0.37 +0.2 253,504 - PGA1_c02670 0.37 -0.9 253,511 - PGA1_c02670 0.38 +1.4 253,511 - PGA1_c02670 0.38 +0.3 253,515 + PGA1_c02670 0.38 -1.3 253,515 + PGA1_c02670 0.38 -0.0 253,528 - PGA1_c02670 0.39 +0.9 253,528 - PGA1_c02670 0.39 -1.4 253,537 + PGA1_c02670 0.40 -0.5 253,594 + PGA1_c02670 0.46 +0.6 253,605 + PGA1_c02670 0.47 +1.7 253,608 - PGA1_c02670 0.47 -0.0 253,614 + PGA1_c02670 0.48 +1.2 253,653 + PGA1_c02670 0.52 +0.8 253,664 + PGA1_c02670 0.53 +0.1 253,664 + PGA1_c02670 0.53 +1.4 253,664 + PGA1_c02670 0.53 +1.0 253,668 - PGA1_c02670 0.53 -0.0 253,672 - PGA1_c02670 0.54 +1.8 253,721 + PGA1_c02670 0.59 -0.9 253,726 + PGA1_c02670 0.59 +1.9 253,741 - PGA1_c02670 0.61 +1.7 253,756 + PGA1_c02670 0.62 +1.2 253,756 + PGA1_c02670 0.62 -0.3 253,756 + PGA1_c02670 0.62 -1.1 253,769 + PGA1_c02670 0.64 +0.6 253,791 + PGA1_c02670 0.66 +0.3 253,801 + PGA1_c02670 0.67 -0.5 253,833 - PGA1_c02670 0.70 +1.6 253,890 - PGA1_c02670 0.76 -1.0 253,898 - PGA1_c02670 0.77 +1.6 253,898 - PGA1_c02670 0.77 +0.1 253,938 + PGA1_c02670 0.81 +0.7 253,943 + PGA1_c02670 0.81 -0.8 253,948 + PGA1_c02670 0.82 -1.7 253,948 + PGA1_c02670 0.82 +1.1 253,948 + PGA1_c02670 0.82 +0.8 253,955 - PGA1_c02670 0.82 -1.3 253,955 - PGA1_c02670 0.82 +0.9 253,962 + PGA1_c02670 0.83 +0.9 253,970 + PGA1_c02670 0.84 -2.4 253,970 + PGA1_c02670 0.84 -0.0 253,975 + PGA1_c02670 0.84 -0.9 253,983 - PGA1_c02670 0.85 +0.5 254,026 + PGA1_c02670 0.90 -0.5 254,026 + PGA1_c02670 0.90 -1.9 254,042 + -0.1 254,053 + -0.9 254,053 + -2.1 254,053 + -2.6 254,053 + -2.3 254,053 + +1.1 254,061 + -2.5 254,061 + -1.4 254,061 - -0.8 254,072 - -1.0 254,153 - +0.6 254,156 + -2.4 254,180 + -1.7 254,180 + +0.7 254,180 + -0.1 254,188 - +1.7 254,188 - -0.2 254,188 - -2.6 254,188 - -0.6 254,357 - -0.9 254,428 + +0.5 254,430 - +1.4 254,433 - -0.6 254,441 - +0.0 254,445 + -0.6 254,447 - -2.6 254,449 + +0.3 254,528 - -0.3 254,528 - +0.3 254,530 - -0.4 254,531 - +0.9 254,539 + -1.1 254,539 + +0.7 254,539 + -3.0 254,547 - +0.7 254,555 + +0.6 254,565 + +1.2 254,598 + -2.2 254,600 + +0.6 254,600 + +0.7 254,600 + +1.2 254,600 + +1.1 254,600 + +0.5 254,600 + +0.3 254,600 + -2.1 254,600 + -0.3 254,600 + +0.1 254,606 + +1.3 254,606 + +1.9 254,608 - -1.5 254,608 - -0.1 254,608 - -1.6 254,608 - +0.8 254,608 - +0.5 254,608 - +0.3 254,608 - -0.0 254,608 - -1.3 254,608 - +2.0 254,608 - -0.4 254,608 - +1.2 254,614 - -0.3 254,614 - +0.1 254,672 + -2.9 254,675 - -0.6 254,679 - -1.1 254,682 - -2.2 254,682 - -0.8 254,690 - -0.2 254,698 + +0.0 254,698 + -0.1 254,701 - -0.3 254,701 - +1.7 254,706 - +1.1 254,706 - -0.8 254,753 - +1.1 254,771 - +1.0 254,801 - +0.9 254,811 - +1.3 254,811 - -1.4 254,852 + +1.9 254,860 - -2.2 254,860 - +1.7 254,860 - -0.9 254,860 - -0.6 254,860 - +1.2 254,860 - -1.0 254,862 + +1.3 254,870 - -0.1 254,870 - +0.5 254,880 - +0.9 254,918 + -0.9 254,918 + +0.7 254,918 + +0.6 254,918 + +1.2 254,918 + +1.6 254,926 - +0.7 254,926 - -2.0 254,926 - +0.7 254,926 - -0.1 254,926 - +1.9 254,926 - +0.3 254,926 - +2.0 254,928 + -0.1 254,928 + -0.0 254,936 - -2.4 254,936 - +1.3 254,936 - +0.9 254,936 - +0.4 254,936 - -0.9 254,944 + -2.3 255,043 - +1.2 255,107 - PGA1_c02690 0.11 +0.8 255,144 - PGA1_c02690 0.13 -0.2 255,146 + PGA1_c02690 0.13 +0.3
Or see this region's nucleotide sequence