Strain Fitness in Marinobacter adhaerens HP15 around HP15_1691

Experiment: m.b. Chloramphenicol 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1690 and HP15_1691 are separated by 255 nucleotidesHP15_1691 and HP15_1692 are separated by 17 nucleotides HP15_1690: HP15_1690 - glutathione-regulated potassium-efflux system protein KefC, at 1,777,008 to 1,778,888 _1690 HP15_1691: HP15_1691 - ATPase AAA-2 domain protein, at 1,779,144 to 1,781,882 _1691 HP15_1692: HP15_1692 - luciferase family protein, at 1,781,900 to 1,782,868 _1692 Position (kb) 1779 1780 1781 1782Strain fitness (log2 ratio) -2 -1 0 1 2at 1778.249 kb on + strand, within HP15_1690at 1778.330 kb on + strand, within HP15_1690at 1778.467 kb on + strand, within HP15_1690at 1778.537 kb on - strand, within HP15_1690at 1778.542 kb on - strand, within HP15_1690at 1778.614 kb on - strand, within HP15_1690at 1778.636 kb on + strand, within HP15_1690at 1778.737 kb on - strandat 1778.798 kb on + strandat 1778.870 kb on + strandat 1778.931 kb on + strandat 1779.118 kb on - strandat 1779.247 kb on + strandat 1779.292 kb on + strandat 1779.292 kb on + strandat 1779.332 kb on - strandat 1779.332 kb on - strandat 1779.572 kb on + strand, within HP15_1691at 1779.671 kb on + strand, within HP15_1691at 1779.689 kb on + strand, within HP15_1691at 1779.689 kb on + strand, within HP15_1691at 1779.697 kb on - strand, within HP15_1691at 1779.843 kb on - strand, within HP15_1691at 1779.852 kb on + strand, within HP15_1691at 1779.855 kb on - strand, within HP15_1691at 1779.993 kb on + strand, within HP15_1691at 1780.117 kb on - strand, within HP15_1691at 1780.124 kb on - strand, within HP15_1691at 1780.288 kb on + strand, within HP15_1691at 1780.430 kb on - strand, within HP15_1691at 1780.454 kb on - strand, within HP15_1691at 1780.460 kb on + strand, within HP15_1691at 1780.805 kb on - strand, within HP15_1691at 1780.805 kb on - strand, within HP15_1691at 1780.837 kb on + strand, within HP15_1691at 1780.912 kb on + strand, within HP15_1691at 1780.915 kb on - strand, within HP15_1691at 1780.920 kb on - strand, within HP15_1691at 1780.985 kb on + strand, within HP15_1691at 1780.997 kb on + strand, within HP15_1691at 1781.005 kb on - strand, within HP15_1691at 1781.185 kb on - strand, within HP15_1691at 1781.185 kb on - strand, within HP15_1691at 1781.212 kb on + strand, within HP15_1691at 1781.639 kb on + strandat 1781.732 kb on + strandat 1781.859 kb on - strandat 1781.896 kb on + strandat 1782.029 kb on + strand, within HP15_1692at 1782.138 kb on + strand, within HP15_1692at 1782.224 kb on + strand, within HP15_1692at 1782.232 kb on - strand, within HP15_1692at 1782.252 kb on + strand, within HP15_1692at 1782.262 kb on + strand, within HP15_1692at 1782.275 kb on - strand, within HP15_1692at 1782.344 kb on - strand, within HP15_1692at 1782.369 kb on + strand, within HP15_1692at 1782.397 kb on - strand, within HP15_1692at 1782.514 kb on + strand, within HP15_1692at 1782.534 kb on + strand, within HP15_1692at 1782.534 kb on + strand, within HP15_1692at 1782.706 kb on - strand, within HP15_1692at 1782.770 kb on - strand, within HP15_1692

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml
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1,778,249 + HP15_1690 0.66 -0.0
1,778,330 + HP15_1690 0.70 +0.7
1,778,467 + HP15_1690 0.78 -0.3
1,778,537 - HP15_1690 0.81 -0.3
1,778,542 - HP15_1690 0.82 +1.1
1,778,614 - HP15_1690 0.85 -0.1
1,778,636 + HP15_1690 0.87 -1.3
1,778,737 - +1.5
1,778,798 + +2.5
1,778,870 + -1.1
1,778,931 + -0.4
1,779,118 - -0.1
1,779,247 + +0.9
1,779,292 + +1.7
1,779,292 + +0.2
1,779,332 - +1.1
1,779,332 - -0.6
1,779,572 + HP15_1691 0.16 -0.4
1,779,671 + HP15_1691 0.19 +0.2
1,779,689 + HP15_1691 0.20 +2.2
1,779,689 + HP15_1691 0.20 -0.8
1,779,697 - HP15_1691 0.20 -0.5
1,779,843 - HP15_1691 0.26 +1.0
1,779,852 + HP15_1691 0.26 -0.0
1,779,855 - HP15_1691 0.26 +0.1
1,779,993 + HP15_1691 0.31 -0.0
1,780,117 - HP15_1691 0.36 -1.1
1,780,124 - HP15_1691 0.36 +0.4
1,780,288 + HP15_1691 0.42 -0.4
1,780,430 - HP15_1691 0.47 -0.1
1,780,454 - HP15_1691 0.48 -1.3
1,780,460 + HP15_1691 0.48 -0.2
1,780,805 - HP15_1691 0.61 +1.6
1,780,805 - HP15_1691 0.61 -0.3
1,780,837 + HP15_1691 0.62 -0.7
1,780,912 + HP15_1691 0.65 +0.0
1,780,915 - HP15_1691 0.65 -0.3
1,780,920 - HP15_1691 0.65 +0.9
1,780,985 + HP15_1691 0.67 -1.3
1,780,997 + HP15_1691 0.68 -2.7
1,781,005 - HP15_1691 0.68 +0.1
1,781,185 - HP15_1691 0.75 +0.8
1,781,185 - HP15_1691 0.75 -1.8
1,781,212 + HP15_1691 0.76 -0.5
1,781,639 + -0.8
1,781,732 + -0.8
1,781,859 - +1.5
1,781,896 + +0.6
1,782,029 + HP15_1692 0.13 +0.3
1,782,138 + HP15_1692 0.25 -1.0
1,782,224 + HP15_1692 0.33 -0.5
1,782,232 - HP15_1692 0.34 -0.1
1,782,252 + HP15_1692 0.36 -1.1
1,782,262 + HP15_1692 0.37 -1.5
1,782,275 - HP15_1692 0.39 -2.7
1,782,344 - HP15_1692 0.46 +0.6
1,782,369 + HP15_1692 0.48 -1.5
1,782,397 - HP15_1692 0.51 -1.0
1,782,514 + HP15_1692 0.63 -1.7
1,782,534 + HP15_1692 0.65 -0.0
1,782,534 + HP15_1692 0.65 +0.2
1,782,706 - HP15_1692 0.83 +0.1
1,782,770 - HP15_1692 0.90 +1.9

Or see this region's nucleotide sequence