Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1690 and HP15_1691 are separated by 255 nucleotides HP15_1691 and HP15_1692 are separated by 17 nucleotides
HP15_1690: HP15_1690 - glutathione-regulated potassium-efflux system protein KefC, at 1,777,008 to 1,778,888
_1690
HP15_1691: HP15_1691 - ATPase AAA-2 domain protein, at 1,779,144 to 1,781,882
_1691
HP15_1692: HP15_1692 - luciferase family protein, at 1,781,900 to 1,782,868
_1692
Position (kb)
1779
1780
1781
1782 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1778.249 kb on + strand, within HP15_1690 at 1778.330 kb on + strand, within HP15_1690 at 1778.467 kb on + strand, within HP15_1690 at 1778.537 kb on - strand, within HP15_1690 at 1778.542 kb on - strand, within HP15_1690 at 1778.614 kb on - strand, within HP15_1690 at 1778.636 kb on + strand, within HP15_1690 at 1778.737 kb on - strand at 1778.798 kb on + strand at 1778.870 kb on + strand at 1778.931 kb on + strand at 1779.118 kb on - strand at 1779.247 kb on + strand at 1779.292 kb on + strand at 1779.292 kb on + strand at 1779.332 kb on - strand at 1779.332 kb on - strand at 1779.572 kb on + strand, within HP15_1691 at 1779.671 kb on + strand, within HP15_1691 at 1779.689 kb on + strand, within HP15_1691 at 1779.689 kb on + strand, within HP15_1691 at 1779.697 kb on - strand, within HP15_1691 at 1779.843 kb on - strand, within HP15_1691 at 1779.852 kb on + strand, within HP15_1691 at 1779.855 kb on - strand, within HP15_1691 at 1779.993 kb on + strand, within HP15_1691 at 1780.117 kb on - strand, within HP15_1691 at 1780.124 kb on - strand, within HP15_1691 at 1780.288 kb on + strand, within HP15_1691 at 1780.430 kb on - strand, within HP15_1691 at 1780.454 kb on - strand, within HP15_1691 at 1780.460 kb on + strand, within HP15_1691 at 1780.805 kb on - strand, within HP15_1691 at 1780.805 kb on - strand, within HP15_1691 at 1780.837 kb on + strand, within HP15_1691 at 1780.912 kb on + strand, within HP15_1691 at 1780.915 kb on - strand, within HP15_1691 at 1780.920 kb on - strand, within HP15_1691 at 1780.985 kb on + strand, within HP15_1691 at 1780.997 kb on + strand, within HP15_1691 at 1781.005 kb on - strand, within HP15_1691 at 1781.185 kb on - strand, within HP15_1691 at 1781.185 kb on - strand, within HP15_1691 at 1781.212 kb on + strand, within HP15_1691 at 1781.639 kb on + strand at 1781.732 kb on + strand at 1781.859 kb on - strand at 1781.896 kb on + strand at 1782.029 kb on + strand, within HP15_1692 at 1782.138 kb on + strand, within HP15_1692 at 1782.224 kb on + strand, within HP15_1692 at 1782.232 kb on - strand, within HP15_1692 at 1782.252 kb on + strand, within HP15_1692 at 1782.262 kb on + strand, within HP15_1692 at 1782.275 kb on - strand, within HP15_1692 at 1782.344 kb on - strand, within HP15_1692 at 1782.369 kb on + strand, within HP15_1692 at 1782.397 kb on - strand, within HP15_1692 at 1782.514 kb on + strand, within HP15_1692 at 1782.534 kb on + strand, within HP15_1692 at 1782.534 kb on + strand, within HP15_1692 at 1782.706 kb on - strand, within HP15_1692 at 1782.770 kb on - strand, within HP15_1692
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 1,778,249 + HP15_1690 0.66 -0.0 1,778,330 + HP15_1690 0.70 +0.7 1,778,467 + HP15_1690 0.78 -0.3 1,778,537 - HP15_1690 0.81 -0.3 1,778,542 - HP15_1690 0.82 +1.1 1,778,614 - HP15_1690 0.85 -0.1 1,778,636 + HP15_1690 0.87 -1.3 1,778,737 - +1.5 1,778,798 + +2.5 1,778,870 + -1.1 1,778,931 + -0.4 1,779,118 - -0.1 1,779,247 + +0.9 1,779,292 + +1.7 1,779,292 + +0.2 1,779,332 - +1.1 1,779,332 - -0.6 1,779,572 + HP15_1691 0.16 -0.4 1,779,671 + HP15_1691 0.19 +0.2 1,779,689 + HP15_1691 0.20 +2.2 1,779,689 + HP15_1691 0.20 -0.8 1,779,697 - HP15_1691 0.20 -0.5 1,779,843 - HP15_1691 0.26 +1.0 1,779,852 + HP15_1691 0.26 -0.0 1,779,855 - HP15_1691 0.26 +0.1 1,779,993 + HP15_1691 0.31 -0.0 1,780,117 - HP15_1691 0.36 -1.1 1,780,124 - HP15_1691 0.36 +0.4 1,780,288 + HP15_1691 0.42 -0.4 1,780,430 - HP15_1691 0.47 -0.1 1,780,454 - HP15_1691 0.48 -1.3 1,780,460 + HP15_1691 0.48 -0.2 1,780,805 - HP15_1691 0.61 +1.6 1,780,805 - HP15_1691 0.61 -0.3 1,780,837 + HP15_1691 0.62 -0.7 1,780,912 + HP15_1691 0.65 +0.0 1,780,915 - HP15_1691 0.65 -0.3 1,780,920 - HP15_1691 0.65 +0.9 1,780,985 + HP15_1691 0.67 -1.3 1,780,997 + HP15_1691 0.68 -2.7 1,781,005 - HP15_1691 0.68 +0.1 1,781,185 - HP15_1691 0.75 +0.8 1,781,185 - HP15_1691 0.75 -1.8 1,781,212 + HP15_1691 0.76 -0.5 1,781,639 + -0.8 1,781,732 + -0.8 1,781,859 - +1.5 1,781,896 + +0.6 1,782,029 + HP15_1692 0.13 +0.3 1,782,138 + HP15_1692 0.25 -1.0 1,782,224 + HP15_1692 0.33 -0.5 1,782,232 - HP15_1692 0.34 -0.1 1,782,252 + HP15_1692 0.36 -1.1 1,782,262 + HP15_1692 0.37 -1.5 1,782,275 - HP15_1692 0.39 -2.7 1,782,344 - HP15_1692 0.46 +0.6 1,782,369 + HP15_1692 0.48 -1.5 1,782,397 - HP15_1692 0.51 -1.0 1,782,514 + HP15_1692 0.63 -1.7 1,782,534 + HP15_1692 0.65 -0.0 1,782,534 + HP15_1692 0.65 +0.2 1,782,706 - HP15_1692 0.83 +0.1 1,782,770 - HP15_1692 0.90 +1.9
Or see this region's nucleotide sequence