Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1684 and HP15_1685 are separated by 13 nucleotides HP15_1685 and HP15_1686 are separated by 122 nucleotides HP15_1686 and HP15_1687 are separated by 123 nucleotides
HP15_1684: HP15_1684 - conserved hypothetical protein, secreted, at 1,770,385 to 1,770,783
_1684
HP15_1685: HP15_1685 - NAD(P)H dehydrogenase (quinone), at 1,770,797 to 1,771,387
_1685
HP15_1686: HP15_1686 - hypothetical transcriptional regulator, at 1,771,510 to 1,771,869
_1686
HP15_1687: HP15_1687 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,771,993 to 1,773,435
_1687
Position (kb)
1771
1772 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1770.614 kb on - strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.664 kb on + strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.687 kb on + strand, within HP15_1684 at 1770.687 kb on + strand, within HP15_1684 at 1770.700 kb on - strand, within HP15_1684 at 1770.802 kb on - strand at 1770.802 kb on - strand at 1770.803 kb on + strand at 1771.106 kb on - strand, within HP15_1685 at 1771.118 kb on - strand, within HP15_1685 at 1771.123 kb on - strand, within HP15_1685 at 1771.128 kb on + strand, within HP15_1685 at 1771.128 kb on - strand, within HP15_1685 at 1771.136 kb on - strand, within HP15_1685 at 1771.136 kb on - strand, within HP15_1685 at 1771.158 kb on + strand, within HP15_1685 at 1771.166 kb on - strand, within HP15_1685 at 1771.282 kb on + strand, within HP15_1685 at 1771.308 kb on + strand, within HP15_1685 at 1771.529 kb on - strand at 1771.565 kb on + strand, within HP15_1686 at 1771.565 kb on + strand, within HP15_1686 at 1771.573 kb on - strand, within HP15_1686 at 1771.616 kb on + strand, within HP15_1686 at 1771.852 kb on - strand at 1771.852 kb on - strand at 1771.852 kb on - strand at 1771.889 kb on - strand at 1771.891 kb on + strand at 1771.927 kb on + strand at 1771.941 kb on + strand at 1772.045 kb on + strand at 1772.079 kb on - strand at 1772.148 kb on - strand, within HP15_1687 at 1772.191 kb on + strand, within HP15_1687 at 1772.239 kb on - strand, within HP15_1687 at 1772.466 kb on + strand, within HP15_1687 at 1772.547 kb on + strand, within HP15_1687 at 1772.594 kb on - strand, within HP15_1687 at 1772.745 kb on - strand, within HP15_1687
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 1,770,614 - HP15_1684 0.57 -0.7 1,770,662 + HP15_1684 0.69 -0.7 1,770,662 + HP15_1684 0.69 +0.0 1,770,662 + HP15_1684 0.69 -1.0 1,770,664 + HP15_1684 0.70 +1.9 1,770,670 - HP15_1684 0.71 -0.6 1,770,670 - HP15_1684 0.71 +0.8 1,770,670 - HP15_1684 0.71 -1.3 1,770,687 + HP15_1684 0.76 +1.1 1,770,687 + HP15_1684 0.76 -0.1 1,770,700 - HP15_1684 0.79 +0.3 1,770,802 - +0.4 1,770,802 - -0.4 1,770,803 + +1.5 1,771,106 - HP15_1685 0.52 +0.3 1,771,118 - HP15_1685 0.54 -0.1 1,771,123 - HP15_1685 0.55 +1.1 1,771,128 + HP15_1685 0.56 -0.2 1,771,128 - HP15_1685 0.56 -0.2 1,771,136 - HP15_1685 0.57 +0.3 1,771,136 - HP15_1685 0.57 +0.7 1,771,158 + HP15_1685 0.61 +0.9 1,771,166 - HP15_1685 0.62 +0.9 1,771,282 + HP15_1685 0.82 +1.2 1,771,308 + HP15_1685 0.86 +1.5 1,771,529 - +1.5 1,771,565 + HP15_1686 0.15 -1.1 1,771,565 + HP15_1686 0.15 -0.4 1,771,573 - HP15_1686 0.17 +0.0 1,771,616 + HP15_1686 0.29 -0.1 1,771,852 - +0.7 1,771,852 - +0.1 1,771,852 - -3.6 1,771,889 - -0.3 1,771,891 + -0.6 1,771,927 + -0.0 1,771,941 + +1.4 1,772,045 + -0.5 1,772,079 - -0.4 1,772,148 - HP15_1687 0.11 -0.7 1,772,191 + HP15_1687 0.14 +0.7 1,772,239 - HP15_1687 0.17 +0.7 1,772,466 + HP15_1687 0.33 -0.9 1,772,547 + HP15_1687 0.38 +0.5 1,772,594 - HP15_1687 0.42 +1.3 1,772,745 - HP15_1687 0.52 +0.7
Or see this region's nucleotide sequence