Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17000

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16990 and PGA1_c17000 are separated by 187 nucleotidesPGA1_c17000 and PGA1_c17010 overlap by 4 nucleotides PGA1_c16990: PGA1_c16990 - putative enoyl-CoA hydratase FadB, at 1,775,266 to 1,776,042 _c16990 PGA1_c17000: PGA1_c17000 - cytochrome c-type biogenesis protein Ccl, at 1,776,230 to 1,776,724 _c17000 PGA1_c17010: PGA1_c17010 - cytochrome c-type biogenesis protein CcmF, at 1,776,721 to 1,778,685 _c17010 Position (kb) 1776 1777Strain fitness (log2 ratio) -2 -1 0 1 2at 1775.236 kb on + strandat 1775.236 kb on + strandat 1775.236 kb on + strandat 1775.244 kb on - strandat 1775.262 kb on - strandat 1775.315 kb on - strandat 1775.315 kb on - strandat 1775.315 kb on - strandat 1775.621 kb on - strand, within PGA1_c16990at 1775.696 kb on - strand, within PGA1_c16990at 1775.754 kb on + strand, within PGA1_c16990at 1775.764 kb on + strand, within PGA1_c16990at 1775.772 kb on - strand, within PGA1_c16990at 1775.797 kb on + strand, within PGA1_c16990at 1775.851 kb on + strand, within PGA1_c16990at 1775.864 kb on - strand, within PGA1_c16990at 1775.866 kb on + strand, within PGA1_c16990at 1775.955 kb on - strand, within PGA1_c16990at 1776.056 kb on - strandat 1776.125 kb on - strandat 1776.125 kb on - strandat 1776.125 kb on - strandat 1776.173 kb on + strandat 1776.181 kb on - strandat 1776.212 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,775,236 + +1.7
1,775,236 + +0.4
1,775,236 + +0.5
1,775,244 - -0.4
1,775,262 - +1.2
1,775,315 - +1.6
1,775,315 - -1.1
1,775,315 - -0.1
1,775,621 - PGA1_c16990 0.46 +1.9
1,775,696 - PGA1_c16990 0.55 +0.4
1,775,754 + PGA1_c16990 0.63 +1.4
1,775,764 + PGA1_c16990 0.64 -0.6
1,775,772 - PGA1_c16990 0.65 +0.1
1,775,797 + PGA1_c16990 0.68 +0.9
1,775,851 + PGA1_c16990 0.75 +0.6
1,775,864 - PGA1_c16990 0.77 +0.4
1,775,866 + PGA1_c16990 0.77 -1.2
1,775,955 - PGA1_c16990 0.89 -1.2
1,776,056 - +1.5
1,776,125 - -0.7
1,776,125 - +0.4
1,776,125 - -1.8
1,776,173 + -2.6
1,776,181 - +0.6
1,776,212 + +1.1

Or see this region's nucleotide sequence