Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14810 and PGA1_c14820 are separated by 69 nucleotides PGA1_c14820 and PGA1_c14830 are separated by 45 nucleotides
PGA1_c14810: PGA1_c14810 - nitrogen assimilation regulatory protein NtrX, at 1,535,821 to 1,537,236
_c14810
PGA1_c14820: PGA1_c14820 - hypothetical protein, at 1,537,306 to 1,537,851
_c14820
PGA1_c14830: PGA1_c14830 - trk system potassium uptake protein TrkA, at 1,537,897 to 1,539,273
_c14830
Position (kb)
1537
1538 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1537.224 kb on + strand at 1537.231 kb on + strand at 1537.241 kb on + strand at 1537.241 kb on + strand at 1537.275 kb on - strand at 1537.287 kb on + strand at 1537.295 kb on - strand at 1537.432 kb on + strand, within PGA1_c14820 at 1537.477 kb on - strand, within PGA1_c14820 at 1537.477 kb on - strand, within PGA1_c14820 at 1537.492 kb on + strand, within PGA1_c14820 at 1537.505 kb on - strand, within PGA1_c14820 at 1537.522 kb on + strand, within PGA1_c14820 at 1537.559 kb on - strand, within PGA1_c14820 at 1537.653 kb on + strand, within PGA1_c14820 at 1537.653 kb on + strand, within PGA1_c14820 at 1537.658 kb on + strand, within PGA1_c14820 at 1537.661 kb on - strand, within PGA1_c14820 at 1537.661 kb on - strand, within PGA1_c14820 at 1537.711 kb on + strand, within PGA1_c14820 at 1537.719 kb on - strand, within PGA1_c14820 at 1537.737 kb on + strand, within PGA1_c14820
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,537,224 + -0.9 1,537,231 + +1.6 1,537,241 + -4.1 1,537,241 + -2.2 1,537,275 - +1.3 1,537,287 + +0.7 1,537,295 - -0.3 1,537,432 + PGA1_c14820 0.23 +1.7 1,537,477 - PGA1_c14820 0.31 +0.4 1,537,477 - PGA1_c14820 0.31 -0.8 1,537,492 + PGA1_c14820 0.34 +1.8 1,537,505 - PGA1_c14820 0.36 -1.7 1,537,522 + PGA1_c14820 0.40 +1.2 1,537,559 - PGA1_c14820 0.46 -1.5 1,537,653 + PGA1_c14820 0.64 -0.9 1,537,653 + PGA1_c14820 0.64 -1.9 1,537,658 + PGA1_c14820 0.64 -1.9 1,537,661 - PGA1_c14820 0.65 +1.6 1,537,661 - PGA1_c14820 0.65 +0.9 1,537,711 + PGA1_c14820 0.74 +0.5 1,537,719 - PGA1_c14820 0.76 +1.2 1,537,737 + PGA1_c14820 0.79 -0.2
Or see this region's nucleotide sequence