Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14680 and PGA1_c14690 overlap by 4 nucleotides PGA1_c14690 and PGA1_c14700 are separated by 51 nucleotides PGA1_c14700 and PGA1_c14710 are separated by 216 nucleotides
PGA1_c14680: PGA1_c14680 - lipoyl synthase LipA, at 1,522,194 to 1,523,210
_c14680
PGA1_c14690: PGA1_c14690 - putative hydrolase, at 1,523,207 to 1,524,349
_c14690
PGA1_c14700: PGA1_c14700 - hypothetical protein, at 1,524,401 to 1,524,727
_c14700
PGA1_c14710: PGA1_c14710 - hypoxanthine-guanine phosphoribosyltransferase Hpt, at 1,524,944 to 1,525,489
_c14710
Position (kb)
1523
1524
1525 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1523.237 kb on + strand at 1523.284 kb on + strand at 1523.284 kb on + strand at 1523.284 kb on + strand at 1523.348 kb on + strand, within PGA1_c14690 at 1523.365 kb on - strand, within PGA1_c14690 at 1523.415 kb on + strand, within PGA1_c14690 at 1523.461 kb on - strand, within PGA1_c14690 at 1523.466 kb on - strand, within PGA1_c14690 at 1523.491 kb on + strand, within PGA1_c14690 at 1523.609 kb on - strand, within PGA1_c14690 at 1523.660 kb on + strand, within PGA1_c14690 at 1523.668 kb on - strand, within PGA1_c14690 at 1523.668 kb on - strand, within PGA1_c14690 at 1523.668 kb on - strand, within PGA1_c14690 at 1523.668 kb on - strand, within PGA1_c14690 at 1523.668 kb on - strand, within PGA1_c14690 at 1523.710 kb on + strand, within PGA1_c14690 at 1523.899 kb on + strand, within PGA1_c14690 at 1523.903 kb on - strand, within PGA1_c14690 at 1523.948 kb on + strand, within PGA1_c14690 at 1523.958 kb on + strand, within PGA1_c14690 at 1524.018 kb on - strand, within PGA1_c14690 at 1524.047 kb on + strand, within PGA1_c14690 at 1524.061 kb on - strand, within PGA1_c14690 at 1524.169 kb on + strand, within PGA1_c14690 at 1524.175 kb on + strand, within PGA1_c14690 at 1524.175 kb on + strand, within PGA1_c14690 at 1524.175 kb on + strand, within PGA1_c14690 at 1524.427 kb on - strand at 1524.460 kb on - strand, within PGA1_c14700 at 1524.463 kb on - strand, within PGA1_c14700 at 1524.500 kb on + strand, within PGA1_c14700 at 1524.508 kb on - strand, within PGA1_c14700 at 1524.620 kb on + strand, within PGA1_c14700 at 1524.653 kb on - strand, within PGA1_c14700 at 1524.699 kb on - strand at 1524.711 kb on + strand at 1524.764 kb on + strand at 1524.828 kb on - strand at 1524.861 kb on - strand at 1525.050 kb on - strand, within PGA1_c14710 at 1525.128 kb on - strand, within PGA1_c14710 at 1525.146 kb on + strand, within PGA1_c14710 at 1525.170 kb on - strand, within PGA1_c14710
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,523,237 + -1.5 1,523,284 + +0.0 1,523,284 + -0.1 1,523,284 + +0.7 1,523,348 + PGA1_c14690 0.12 -0.2 1,523,365 - PGA1_c14690 0.14 +0.2 1,523,415 + PGA1_c14690 0.18 -2.9 1,523,461 - PGA1_c14690 0.22 +2.1 1,523,466 - PGA1_c14690 0.23 -1.9 1,523,491 + PGA1_c14690 0.25 +2.0 1,523,609 - PGA1_c14690 0.35 +0.4 1,523,660 + PGA1_c14690 0.40 -1.3 1,523,668 - PGA1_c14690 0.40 -0.9 1,523,668 - PGA1_c14690 0.40 -0.9 1,523,668 - PGA1_c14690 0.40 +0.3 1,523,668 - PGA1_c14690 0.40 -1.5 1,523,668 - PGA1_c14690 0.40 -3.1 1,523,710 + PGA1_c14690 0.44 +0.2 1,523,899 + PGA1_c14690 0.61 -2.7 1,523,903 - PGA1_c14690 0.61 +0.7 1,523,948 + PGA1_c14690 0.65 +0.3 1,523,958 + PGA1_c14690 0.66 -1.5 1,524,018 - PGA1_c14690 0.71 -2.9 1,524,047 + PGA1_c14690 0.73 -1.2 1,524,061 - PGA1_c14690 0.75 -1.1 1,524,169 + PGA1_c14690 0.84 -0.6 1,524,175 + PGA1_c14690 0.85 -2.9 1,524,175 + PGA1_c14690 0.85 +1.8 1,524,175 + PGA1_c14690 0.85 -0.2 1,524,427 - +0.6 1,524,460 - PGA1_c14700 0.18 -1.2 1,524,463 - PGA1_c14700 0.19 -3.2 1,524,500 + PGA1_c14700 0.30 -0.1 1,524,508 - PGA1_c14700 0.33 -2.5 1,524,620 + PGA1_c14700 0.67 -0.3 1,524,653 - PGA1_c14700 0.77 -0.2 1,524,699 - +1.7 1,524,711 + -2.8 1,524,764 + +1.2 1,524,828 - -1.5 1,524,861 - +1.5 1,525,050 - PGA1_c14710 0.19 +0.9 1,525,128 - PGA1_c14710 0.34 +1.4 1,525,146 + PGA1_c14710 0.37 -1.1 1,525,170 - PGA1_c14710 0.41 -2.5
Or see this region's nucleotide sequence