Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1303 and HP15_1304 are separated by 12 nucleotides HP15_1304 and HP15_1305 are separated by 0 nucleotides HP15_1305 and HP15_1306 are separated by 223 nucleotides
HP15_1303: HP15_1303 - chromosome partitioning protein, ParA family, at 1,363,192 to 1,363,980
_1303
HP15_1304: HP15_1304 - protein containing DUF446, at 1,363,993 to 1,364,328
_1304
HP15_1305: HP15_1305 - nicotinate-nucleotide pyrophosphorylase, at 1,364,329 to 1,365,168
_1305
HP15_1306: HP15_1306 - protein containing DUF1631, at 1,365,392 to 1,367,689
_1306
Position (kb)
1364
1365
1366 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1363.361 kb on - strand, within HP15_1303 at 1363.393 kb on + strand, within HP15_1303 at 1363.457 kb on + strand, within HP15_1303 at 1363.636 kb on - strand, within HP15_1303 at 1363.669 kb on + strand, within HP15_1303 at 1363.671 kb on + strand, within HP15_1303 at 1363.677 kb on - strand, within HP15_1303 at 1363.679 kb on - strand, within HP15_1303 at 1363.679 kb on - strand, within HP15_1303 at 1363.679 kb on - strand, within HP15_1303 at 1363.751 kb on + strand, within HP15_1303 at 1363.980 kb on + strand at 1363.997 kb on - strand at 1364.069 kb on + strand, within HP15_1304 at 1364.321 kb on - strand at 1365.194 kb on - strand at 1365.246 kb on + strand at 1365.248 kb on - strand at 1365.278 kb on + strand at 1365.375 kb on - strand at 1365.395 kb on - strand at 1365.483 kb on + strand at 1365.488 kb on + strand at 1365.534 kb on + strand at 1365.552 kb on - strand at 1365.652 kb on - strand, within HP15_1306 at 1365.710 kb on - strand, within HP15_1306 at 1365.864 kb on + strand, within HP15_1306 at 1365.923 kb on + strand, within HP15_1306 at 1365.923 kb on + strand, within HP15_1306 at 1365.928 kb on + strand, within HP15_1306 at 1365.933 kb on + strand, within HP15_1306 at 1366.083 kb on + strand, within HP15_1306 at 1366.136 kb on - strand, within HP15_1306
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 1,363,361 - HP15_1303 0.21 +0.5 1,363,393 + HP15_1303 0.25 -0.2 1,363,457 + HP15_1303 0.34 +0.8 1,363,636 - HP15_1303 0.56 +0.6 1,363,669 + HP15_1303 0.60 -0.1 1,363,671 + HP15_1303 0.61 +0.3 1,363,677 - HP15_1303 0.61 +0.6 1,363,679 - HP15_1303 0.62 +0.1 1,363,679 - HP15_1303 0.62 +2.8 1,363,679 - HP15_1303 0.62 +2.3 1,363,751 + HP15_1303 0.71 -0.1 1,363,980 + -1.2 1,363,997 - +0.3 1,364,069 + HP15_1304 0.23 +0.5 1,364,321 - -0.9 1,365,194 - +0.4 1,365,246 + +0.1 1,365,248 - -0.3 1,365,278 + +1.0 1,365,375 - +0.2 1,365,395 - -0.0 1,365,483 + -0.0 1,365,488 + -0.8 1,365,534 + +1.3 1,365,552 - +0.7 1,365,652 - HP15_1306 0.11 -0.7 1,365,710 - HP15_1306 0.14 +1.2 1,365,864 + HP15_1306 0.21 +2.5 1,365,923 + HP15_1306 0.23 -1.3 1,365,923 + HP15_1306 0.23 +0.1 1,365,928 + HP15_1306 0.23 -1.3 1,365,933 + HP15_1306 0.24 -0.5 1,366,083 + HP15_1306 0.30 -0.2 1,366,136 - HP15_1306 0.32 -0.2
Or see this region's nucleotide sequence