Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1301 and HP15_1302 overlap by 4 nucleotides HP15_1302 and HP15_1303 are separated by 69 nucleotides HP15_1303 and HP15_1304 are separated by 12 nucleotides HP15_1304 and HP15_1305 are separated by 0 nucleotides
HP15_1301: HP15_1301 - phosphatidylglycerophosphate synthase, at 1,361,873 to 1,362,427
_1301
HP15_1302: HP15_1302 - DNA replication initiation factor, at 1,362,424 to 1,363,122
_1302
HP15_1303: HP15_1303 - chromosome partitioning protein, ParA family, at 1,363,192 to 1,363,980
_1303
HP15_1304: HP15_1304 - protein containing DUF446, at 1,363,993 to 1,364,328
_1304
HP15_1305: HP15_1305 - nicotinate-nucleotide pyrophosphorylase, at 1,364,329 to 1,365,168
_1305
Position (kb)
1363
1364 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1362.202 kb on + strand, within HP15_1301 at 1362.202 kb on + strand, within HP15_1301 at 1362.316 kb on + strand, within HP15_1301 at 1362.321 kb on + strand, within HP15_1301 at 1363.165 kb on + strand at 1363.173 kb on - strand at 1363.232 kb on - strand at 1363.232 kb on - strand at 1363.289 kb on - strand, within HP15_1303 at 1363.361 kb on - strand, within HP15_1303 at 1363.393 kb on + strand, within HP15_1303 at 1363.457 kb on + strand, within HP15_1303 at 1363.636 kb on - strand, within HP15_1303 at 1363.669 kb on + strand, within HP15_1303 at 1363.671 kb on + strand, within HP15_1303 at 1363.677 kb on - strand, within HP15_1303 at 1363.679 kb on - strand, within HP15_1303 at 1363.679 kb on - strand, within HP15_1303 at 1363.679 kb on - strand, within HP15_1303 at 1363.751 kb on + strand, within HP15_1303 at 1363.980 kb on + strand at 1363.997 kb on - strand at 1364.069 kb on + strand, within HP15_1304 at 1364.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 1,362,202 + HP15_1301 0.59 +0.3 1,362,202 + HP15_1301 0.59 -0.6 1,362,316 + HP15_1301 0.80 +0.5 1,362,321 + HP15_1301 0.81 -0.3 1,363,165 + -1.0 1,363,173 - -0.2 1,363,232 - +2.3 1,363,232 - -0.4 1,363,289 - HP15_1303 0.12 -0.9 1,363,361 - HP15_1303 0.21 +0.5 1,363,393 + HP15_1303 0.25 -0.2 1,363,457 + HP15_1303 0.34 +0.8 1,363,636 - HP15_1303 0.56 +0.6 1,363,669 + HP15_1303 0.60 -0.1 1,363,671 + HP15_1303 0.61 +0.3 1,363,677 - HP15_1303 0.61 +0.6 1,363,679 - HP15_1303 0.62 +0.1 1,363,679 - HP15_1303 0.62 +2.8 1,363,679 - HP15_1303 0.62 +2.3 1,363,751 + HP15_1303 0.71 -0.1 1,363,980 + -1.2 1,363,997 - +0.3 1,364,069 + HP15_1304 0.23 +0.5 1,364,321 - -0.9
Or see this region's nucleotide sequence