Experiment: m.b. Chloramphenicol 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1197 and HP15_1198 are separated by 47 nucleotides HP15_1198 and HP15_1199 are separated by 61 nucleotides
HP15_1197: HP15_1197 - conserved hypothetical protein, at 1,232,373 to 1,233,335
_1197
HP15_1198: HP15_1198 - protein containing putative phage-type endonuclease domain, at 1,233,383 to 1,234,423
_1198
HP15_1199: HP15_1199 - conserved hypothetical protein, at 1,234,485 to 1,235,417
_1199
Position (kb) 1233
1234
1235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1232.413 kb on + strand at 1232.414 kb on - strand at 1232.415 kb on - strand at 1232.441 kb on + strand at 1232.443 kb on + strand at 1232.558 kb on - strand, within HP15_1197 at 1232.606 kb on - strand, within HP15_1197 at 1232.717 kb on - strand, within HP15_1197 at 1232.765 kb on + strand, within HP15_1197 at 1232.894 kb on - strand, within HP15_1197 at 1232.932 kb on - strand, within HP15_1197 at 1232.936 kb on + strand, within HP15_1197 at 1232.984 kb on - strand, within HP15_1197 at 1233.081 kb on - strand, within HP15_1197 at 1233.088 kb on - strand, within HP15_1197 at 1233.145 kb on - strand, within HP15_1197 at 1233.186 kb on + strand, within HP15_1197 at 1233.186 kb on + strand, within HP15_1197 at 1233.225 kb on + strand, within HP15_1197 at 1233.312 kb on - strand at 1233.322 kb on - strand at 1233.481 kb on - strand at 1233.595 kb on + strand, within HP15_1198 at 1233.740 kb on + strand, within HP15_1198 at 1233.750 kb on + strand, within HP15_1198 at 1233.847 kb on + strand, within HP15_1198 at 1233.907 kb on - strand, within HP15_1198 at 1233.940 kb on + strand, within HP15_1198 at 1233.955 kb on - strand, within HP15_1198 at 1233.973 kb on + strand, within HP15_1198 at 1233.975 kb on - strand, within HP15_1198 at 1233.975 kb on - strand, within HP15_1198 at 1234.006 kb on - strand, within HP15_1198 at 1234.116 kb on - strand, within HP15_1198 at 1234.141 kb on - strand, within HP15_1198 at 1234.199 kb on + strand, within HP15_1198 at 1234.217 kb on - strand, within HP15_1198 at 1234.266 kb on + strand, within HP15_1198 at 1234.345 kb on + strand at 1234.353 kb on - strand at 1234.526 kb on + strand at 1234.539 kb on - strand at 1234.706 kb on + strand, within HP15_1199 at 1234.832 kb on + strand, within HP15_1199 at 1234.877 kb on + strand, within HP15_1199 at 1234.892 kb on - strand, within HP15_1199 at 1234.892 kb on - strand, within HP15_1199 at 1234.892 kb on - strand, within HP15_1199 at 1234.892 kb on - strand, within HP15_1199 at 1235.067 kb on - strand, within HP15_1199 at 1235.077 kb on - strand, within HP15_1199 at 1235.105 kb on + strand, within HP15_1199 at 1235.116 kb on + strand, within HP15_1199 at 1235.121 kb on + strand, within HP15_1199 at 1235.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0004 mg/ml remove 1,232,413 + -1.3 1,232,414 - -1.9 1,232,415 - -0.3 1,232,441 + -0.7 1,232,443 + +0.7 1,232,558 - HP15_1197 0.19 +0.0 1,232,606 - HP15_1197 0.24 +1.9 1,232,717 - HP15_1197 0.36 +0.2 1,232,765 + HP15_1197 0.41 +1.3 1,232,894 - HP15_1197 0.54 +0.0 1,232,932 - HP15_1197 0.58 +0.0 1,232,936 + HP15_1197 0.58 -0.4 1,232,984 - HP15_1197 0.63 +1.5 1,233,081 - HP15_1197 0.74 -0.2 1,233,088 - HP15_1197 0.74 -0.2 1,233,145 - HP15_1197 0.80 +1.8 1,233,186 + HP15_1197 0.84 +1.2 1,233,186 + HP15_1197 0.84 +0.6 1,233,225 + HP15_1197 0.88 +0.2 1,233,312 - +0.0 1,233,322 - -0.3 1,233,481 - -0.7 1,233,595 + HP15_1198 0.20 -0.9 1,233,740 + HP15_1198 0.34 -0.2 1,233,750 + HP15_1198 0.35 +1.2 1,233,847 + HP15_1198 0.45 +1.2 1,233,907 - HP15_1198 0.50 -0.5 1,233,940 + HP15_1198 0.54 -2.6 1,233,955 - HP15_1198 0.55 +1.1 1,233,973 + HP15_1198 0.57 +0.8 1,233,975 - HP15_1198 0.57 +0.8 1,233,975 - HP15_1198 0.57 -0.6 1,234,006 - HP15_1198 0.60 +0.0 1,234,116 - HP15_1198 0.70 -1.0 1,234,141 - HP15_1198 0.73 +1.0 1,234,199 + HP15_1198 0.78 +1.1 1,234,217 - HP15_1198 0.80 +0.8 1,234,266 + HP15_1198 0.85 +0.0 1,234,345 + -2.2 1,234,353 - -0.5 1,234,526 + -1.6 1,234,539 - +2.0 1,234,706 + HP15_1199 0.24 -0.3 1,234,832 + HP15_1199 0.37 +1.6 1,234,877 + HP15_1199 0.42 -0.1 1,234,892 - HP15_1199 0.44 -0.4 1,234,892 - HP15_1199 0.44 +0.6 1,234,892 - HP15_1199 0.44 -0.6 1,234,892 - HP15_1199 0.44 +0.0 1,235,067 - HP15_1199 0.62 -1.0 1,235,077 - HP15_1199 0.63 +0.5 1,235,105 + HP15_1199 0.66 -0.6 1,235,116 + HP15_1199 0.68 +0.5 1,235,121 + HP15_1199 0.68 -1.1 1,235,396 - +0.5
Or see this region's nucleotide sequence