Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3833 and Dshi_3834 overlap by 11 nucleotides Dshi_3834 and Dshi_3835 overlap by 26 nucleotides Dshi_3835 and Dshi_3836 overlap by 4 nucleotides Dshi_3836 and Dshi_3837 are separated by 136 nucleotides
Dshi_3833: Dshi_3833 - phospholipase D/Transphosphatidylase (RefSeq), at 41,763 to 43,181
_3833
Dshi_3834: Dshi_3834 - signal transduction histidine kinase (RefSeq), at 43,171 to 44,907
_3834
Dshi_3835: Dshi_3835 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 44,882 to 45,445
_3835
Dshi_3836: Dshi_3836 - hypothetical protein (RefSeq), at 45,442 to 45,621
_3836
Dshi_3837: Dshi_3837 - response regulator receiver and SARP domain protein (RefSeq), at 45,758 to 46,573
_3837
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 42.330 kb on + strand, within Dshi_3833 at 42.429 kb on - strand, within Dshi_3833 at 42.456 kb on + strand, within Dshi_3833 at 42.542 kb on + strand, within Dshi_3833 at 42.593 kb on + strand, within Dshi_3833 at 42.593 kb on + strand, within Dshi_3833 at 42.683 kb on + strand, within Dshi_3833 at 42.684 kb on + strand, within Dshi_3833 at 42.764 kb on - strand, within Dshi_3833 at 42.786 kb on - strand, within Dshi_3833 at 42.856 kb on - strand, within Dshi_3833 at 42.856 kb on - strand, within Dshi_3833 at 43.012 kb on - strand, within Dshi_3833 at 43.047 kb on - strand at 43.049 kb on + strand at 43.218 kb on + strand at 43.218 kb on + strand at 43.226 kb on - strand at 43.380 kb on - strand, within Dshi_3834 at 43.400 kb on - strand, within Dshi_3834 at 43.477 kb on - strand, within Dshi_3834 at 43.496 kb on + strand, within Dshi_3834 at 43.499 kb on - strand, within Dshi_3834 at 43.504 kb on - strand, within Dshi_3834 at 43.667 kb on - strand, within Dshi_3834 at 43.715 kb on + strand, within Dshi_3834 at 43.765 kb on - strand, within Dshi_3834 at 43.779 kb on - strand, within Dshi_3834 at 43.817 kb on - strand, within Dshi_3834 at 43.851 kb on - strand, within Dshi_3834 at 44.003 kb on - strand, within Dshi_3834 at 44.024 kb on - strand, within Dshi_3834 at 44.128 kb on - strand, within Dshi_3834 at 44.138 kb on + strand, within Dshi_3834 at 44.208 kb on - strand, within Dshi_3834 at 44.251 kb on - strand, within Dshi_3834 at 44.256 kb on + strand, within Dshi_3834 at 44.267 kb on + strand, within Dshi_3834 at 44.280 kb on - strand, within Dshi_3834 at 44.295 kb on - strand, within Dshi_3834 at 44.365 kb on - strand, within Dshi_3834 at 44.446 kb on - strand, within Dshi_3834 at 44.480 kb on + strand, within Dshi_3834 at 44.542 kb on + strand, within Dshi_3834 at 44.551 kb on - strand, within Dshi_3834 at 44.715 kb on - strand, within Dshi_3834 at 44.715 kb on - strand, within Dshi_3834 at 44.715 kb on - strand, within Dshi_3834 at 44.752 kb on + strand at 44.879 kb on + strand at 44.879 kb on + strand at 44.917 kb on + strand at 44.958 kb on + strand, within Dshi_3835 at 44.985 kb on - strand, within Dshi_3835 at 45.255 kb on + strand, within Dshi_3835 at 45.258 kb on - strand, within Dshi_3835 at 45.312 kb on + strand, within Dshi_3835 at 45.320 kb on - strand, within Dshi_3835 at 45.320 kb on - strand, within Dshi_3835 at 45.321 kb on + strand, within Dshi_3835 at 45.426 kb on + strand at 45.519 kb on - strand, within Dshi_3836 at 45.534 kb on - strand, within Dshi_3836 at 45.545 kb on - strand, within Dshi_3836 at 45.623 kb on - strand at 45.623 kb on - strand at 45.624 kb on - strand at 45.664 kb on - strand at 45.759 kb on + strand at 45.771 kb on + strand at 45.801 kb on - strand at 45.857 kb on + strand, within Dshi_3837 at 45.870 kb on - strand, within Dshi_3837
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 42,330 + Dshi_3833 0.40 -0.4 42,429 - Dshi_3833 0.47 -0.2 42,456 + Dshi_3833 0.49 +0.1 42,542 + Dshi_3833 0.55 +0.3 42,593 + Dshi_3833 0.58 +1.0 42,593 + Dshi_3833 0.58 +0.0 42,683 + Dshi_3833 0.65 -0.0 42,684 + Dshi_3833 0.65 -0.0 42,764 - Dshi_3833 0.71 +1.1 42,786 - Dshi_3833 0.72 +0.2 42,856 - Dshi_3833 0.77 -0.5 42,856 - Dshi_3833 0.77 +0.4 43,012 - Dshi_3833 0.88 +0.0 43,047 - +0.0 43,049 + +0.6 43,218 + -0.0 43,218 + -0.7 43,226 - -2.1 43,380 - Dshi_3834 0.12 -0.8 43,400 - Dshi_3834 0.13 +0.9 43,477 - Dshi_3834 0.18 -0.9 43,496 + Dshi_3834 0.19 -1.9 43,499 - Dshi_3834 0.19 +0.8 43,504 - Dshi_3834 0.19 +1.6 43,667 - Dshi_3834 0.29 +0.3 43,715 + Dshi_3834 0.31 +2.6 43,765 - Dshi_3834 0.34 +0.7 43,779 - Dshi_3834 0.35 +0.6 43,817 - Dshi_3834 0.37 -1.4 43,851 - Dshi_3834 0.39 +0.7 44,003 - Dshi_3834 0.48 +0.0 44,024 - Dshi_3834 0.49 +1.5 44,128 - Dshi_3834 0.55 +0.8 44,138 + Dshi_3834 0.56 -0.7 44,208 - Dshi_3834 0.60 +0.8 44,251 - Dshi_3834 0.62 -0.8 44,256 + Dshi_3834 0.62 -0.7 44,267 + Dshi_3834 0.63 -0.4 44,280 - Dshi_3834 0.64 -0.0 44,295 - Dshi_3834 0.65 +0.4 44,365 - Dshi_3834 0.69 -0.5 44,446 - Dshi_3834 0.73 +0.0 44,480 + Dshi_3834 0.75 +0.7 44,542 + Dshi_3834 0.79 +0.2 44,551 - Dshi_3834 0.79 -1.7 44,715 - Dshi_3834 0.89 +0.4 44,715 - Dshi_3834 0.89 -1.6 44,715 - Dshi_3834 0.89 -0.0 44,752 + +0.2 44,879 + +0.3 44,879 + +0.1 44,917 + -0.1 44,958 + Dshi_3835 0.13 -0.2 44,985 - Dshi_3835 0.18 +0.6 45,255 + Dshi_3835 0.66 -0.2 45,258 - Dshi_3835 0.67 +0.1 45,312 + Dshi_3835 0.76 +1.0 45,320 - Dshi_3835 0.78 -0.7 45,320 - Dshi_3835 0.78 +1.4 45,321 + Dshi_3835 0.78 -0.4 45,426 + +0.2 45,519 - Dshi_3836 0.43 -0.5 45,534 - Dshi_3836 0.51 +0.2 45,545 - Dshi_3836 0.57 +0.3 45,623 - +0.3 45,623 - +0.5 45,624 - -0.0 45,664 - -1.1 45,759 + -1.0 45,771 + +1.0 45,801 - +0.4 45,857 + Dshi_3837 0.12 +0.9 45,870 - Dshi_3837 0.14 +0.1
Or see this region's nucleotide sequence