Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0541

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0539 and Dshi_0540 are separated by 77 nucleotidesDshi_0540 and Dshi_0541 are separated by 134 nucleotidesDshi_0541 and Dshi_0542 are separated by 420 nucleotides Dshi_0539: Dshi_0539 - aldo/keto reductase (RefSeq), at 524,529 to 525,467 _0539 Dshi_0540: Dshi_0540 - NnrUfamily protein (RefSeq), at 525,545 to 526,321 _0540 Dshi_0541: Dshi_0541 - oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 526,456 to 527,820 _0541 Dshi_0542: Dshi_0542 - phosphate transporter (RefSeq), at 528,241 to 529,869 _0542 Position (kb) 526 527 528Strain fitness (log2 ratio) -2 -1 0 1at 525.462 kb on + strandat 525.470 kb on - strandat 525.476 kb on + strandat 525.520 kb on - strandat 525.531 kb on + strandat 525.531 kb on + strandat 525.539 kb on + strandat 525.583 kb on + strandat 525.603 kb on + strandat 525.733 kb on + strand, within Dshi_0540at 525.780 kb on + strand, within Dshi_0540at 525.800 kb on + strand, within Dshi_0540at 525.805 kb on + strand, within Dshi_0540at 525.848 kb on + strand, within Dshi_0540at 525.867 kb on + strand, within Dshi_0540at 525.932 kb on - strand, within Dshi_0540at 525.985 kb on - strand, within Dshi_0540at 525.995 kb on - strand, within Dshi_0540at 526.003 kb on + strand, within Dshi_0540at 526.065 kb on - strand, within Dshi_0540at 526.115 kb on + strand, within Dshi_0540at 526.150 kb on + strand, within Dshi_0540at 526.235 kb on - strand, within Dshi_0540at 526.248 kb on + strandat 526.308 kb on + strandat 526.347 kb on + strandat 526.368 kb on + strandat 526.447 kb on - strandat 526.525 kb on - strandat 526.530 kb on - strandat 526.537 kb on - strandat 526.598 kb on + strand, within Dshi_0541at 526.667 kb on + strand, within Dshi_0541at 526.735 kb on + strand, within Dshi_0541at 526.779 kb on + strand, within Dshi_0541at 526.898 kb on + strand, within Dshi_0541at 526.964 kb on + strand, within Dshi_0541at 526.966 kb on - strand, within Dshi_0541at 527.085 kb on + strand, within Dshi_0541at 527.104 kb on - strand, within Dshi_0541at 527.121 kb on + strand, within Dshi_0541at 527.129 kb on - strand, within Dshi_0541at 527.131 kb on + strand, within Dshi_0541at 527.152 kb on + strand, within Dshi_0541at 527.191 kb on - strand, within Dshi_0541at 527.229 kb on + strand, within Dshi_0541at 527.265 kb on - strand, within Dshi_0541at 527.286 kb on + strand, within Dshi_0541at 527.472 kb on - strand, within Dshi_0541at 527.535 kb on - strand, within Dshi_0541at 527.541 kb on - strand, within Dshi_0541at 527.548 kb on + strand, within Dshi_0541at 527.554 kb on + strand, within Dshi_0541at 527.583 kb on + strand, within Dshi_0541at 527.596 kb on + strand, within Dshi_0541at 527.623 kb on - strand, within Dshi_0541at 527.630 kb on + strand, within Dshi_0541at 527.649 kb on + strand, within Dshi_0541at 527.649 kb on + strand, within Dshi_0541at 527.738 kb on - strandat 527.738 kb on - strandat 527.738 kb on - strandat 527.754 kb on + strandat 527.767 kb on - strandat 527.914 kb on + strandat 527.940 kb on + strandat 527.948 kb on - strandat 527.962 kb on + strandat 528.006 kb on - strandat 528.024 kb on - strandat 528.108 kb on - strandat 528.185 kb on + strandat 528.247 kb on - strandat 528.265 kb on - strandat 528.313 kb on + strandat 528.350 kb on - strandat 528.357 kb on + strandat 528.367 kb on + strandat 528.416 kb on + strand, within Dshi_0542at 528.422 kb on + strand, within Dshi_0542at 528.424 kb on - strand, within Dshi_0542at 528.424 kb on - strand, within Dshi_0542at 528.429 kb on - strand, within Dshi_0542at 528.473 kb on - strand, within Dshi_0542at 528.502 kb on - strand, within Dshi_0542at 528.529 kb on - strand, within Dshi_0542at 528.533 kb on - strand, within Dshi_0542at 528.564 kb on + strand, within Dshi_0542at 528.613 kb on + strand, within Dshi_0542at 528.618 kb on + strand, within Dshi_0542at 528.618 kb on + strand, within Dshi_0542at 528.658 kb on - strand, within Dshi_0542at 528.685 kb on + strand, within Dshi_0542at 528.694 kb on - strand, within Dshi_0542at 528.700 kb on - strand, within Dshi_0542at 528.716 kb on - strand, within Dshi_0542at 528.731 kb on + strand, within Dshi_0542at 528.736 kb on + strand, within Dshi_0542at 528.737 kb on - strand, within Dshi_0542at 528.739 kb on - strand, within Dshi_0542at 528.739 kb on - strand, within Dshi_0542at 528.744 kb on - strand, within Dshi_0542at 528.744 kb on - strand, within Dshi_0542at 528.749 kb on - strand, within Dshi_0542at 528.771 kb on - strand, within Dshi_0542at 528.800 kb on - strand, within Dshi_0542

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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525,462 + +1.5
525,470 - +0.7
525,476 + +1.3
525,520 - -0.3
525,531 + -0.4
525,531 + -0.9
525,539 + -1.1
525,583 + +0.3
525,603 + -1.2
525,733 + Dshi_0540 0.24 -1.1
525,780 + Dshi_0540 0.30 +1.1
525,800 + Dshi_0540 0.33 -0.1
525,805 + Dshi_0540 0.33 -0.2
525,848 + Dshi_0540 0.39 +0.2
525,867 + Dshi_0540 0.41 +0.8
525,932 - Dshi_0540 0.50 -0.1
525,985 - Dshi_0540 0.57 +0.5
525,995 - Dshi_0540 0.58 +0.5
526,003 + Dshi_0540 0.59 +0.6
526,065 - Dshi_0540 0.67 +0.7
526,115 + Dshi_0540 0.73 +0.8
526,150 + Dshi_0540 0.78 +1.5
526,235 - Dshi_0540 0.89 -0.7
526,248 + +0.1
526,308 + -0.3
526,347 + -1.4
526,368 + +1.0
526,447 - +0.1
526,525 - -1.2
526,530 - -1.0
526,537 - -2.7
526,598 + Dshi_0541 0.10 -0.8
526,667 + Dshi_0541 0.15 +0.0
526,735 + Dshi_0541 0.20 -0.8
526,779 + Dshi_0541 0.24 -1.4
526,898 + Dshi_0541 0.32 -0.2
526,964 + Dshi_0541 0.37 -0.7
526,966 - Dshi_0541 0.37 -0.8
527,085 + Dshi_0541 0.46 +0.1
527,104 - Dshi_0541 0.47 -2.6
527,121 + Dshi_0541 0.49 -0.4
527,129 - Dshi_0541 0.49 +0.2
527,131 + Dshi_0541 0.49 -0.3
527,152 + Dshi_0541 0.51 -0.5
527,191 - Dshi_0541 0.54 +0.3
527,229 + Dshi_0541 0.57 +0.8
527,265 - Dshi_0541 0.59 +0.4
527,286 + Dshi_0541 0.61 +0.4
527,472 - Dshi_0541 0.74 -0.6
527,535 - Dshi_0541 0.79 +0.6
527,541 - Dshi_0541 0.79 -0.2
527,548 + Dshi_0541 0.80 +0.0
527,554 + Dshi_0541 0.80 -0.4
527,583 + Dshi_0541 0.83 +0.4
527,596 + Dshi_0541 0.84 +1.2
527,623 - Dshi_0541 0.85 -0.2
527,630 + Dshi_0541 0.86 -0.3
527,649 + Dshi_0541 0.87 +0.4
527,649 + Dshi_0541 0.87 -1.7
527,738 - -0.8
527,738 - +0.1
527,738 - +0.3
527,754 + +0.2
527,767 - -0.2
527,914 + +0.3
527,940 + +0.6
527,948 - -0.2
527,962 + -0.2
528,006 - -0.1
528,024 - -0.0
528,108 - -0.0
528,185 + +0.3
528,247 - +0.1
528,265 - -0.1
528,313 + +0.1
528,350 - +0.6
528,357 + -0.2
528,367 + +0.4
528,416 + Dshi_0542 0.11 -0.4
528,422 + Dshi_0542 0.11 +1.2
528,424 - Dshi_0542 0.11 -0.2
528,424 - Dshi_0542 0.11 -1.1
528,429 - Dshi_0542 0.12 -2.1
528,473 - Dshi_0542 0.14 +0.2
528,502 - Dshi_0542 0.16 -0.1
528,529 - Dshi_0542 0.18 +0.1
528,533 - Dshi_0542 0.18 -0.2
528,564 + Dshi_0542 0.20 -0.4
528,613 + Dshi_0542 0.23 -0.1
528,618 + Dshi_0542 0.23 +0.9
528,618 + Dshi_0542 0.23 +0.9
528,658 - Dshi_0542 0.26 +0.8
528,685 + Dshi_0542 0.27 -0.8
528,694 - Dshi_0542 0.28 -0.8
528,700 - Dshi_0542 0.28 +0.2
528,716 - Dshi_0542 0.29 +0.5
528,731 + Dshi_0542 0.30 +0.4
528,736 + Dshi_0542 0.30 +0.5
528,737 - Dshi_0542 0.30 +0.5
528,739 - Dshi_0542 0.31 -0.8
528,739 - Dshi_0542 0.31 -2.3
528,744 - Dshi_0542 0.31 +0.1
528,744 - Dshi_0542 0.31 -0.2
528,749 - Dshi_0542 0.31 +0.2
528,771 - Dshi_0542 0.33 -0.4
528,800 - Dshi_0542 0.34 +0.9

Or see this region's nucleotide sequence