Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0908 and SO0909 are separated by 42 nucleotides SO0909 and SO0910 are separated by 352 nucleotides SO0910 and SO_0911 are separated by 789 nucleotides
SO0908: SO0908 - conserved domain protein (NCBI ptt file), at 934,918 to 935,235
SO0908
SO0909: SO0909 - hypothetical protein (NCBI ptt file), at 935,278 to 935,841
SO0909
SO0910: SO0910 - hypothetical protein (NCBI ptt file), at 936,194 to 937,228
SO0910
SO_0911: SO_0911 - no description, at 938,018 to 938,662
_0911
Position (kb) 936
937
938 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 935.197 kb on + strand, within SO0908 at 935.226 kb on - strand at 935.226 kb on - strand at 935.226 kb on - strand at 935.249 kb on - strand at 935.274 kb on - strand at 935.334 kb on + strand at 935.381 kb on + strand, within SO0909 at 935.390 kb on + strand, within SO0909 at 935.390 kb on + strand, within SO0909 at 935.397 kb on + strand, within SO0909 at 935.400 kb on + strand, within SO0909 at 935.415 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.523 kb on + strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.531 kb on - strand, within SO0909 at 935.555 kb on + strand, within SO0909 at 935.577 kb on + strand, within SO0909 at 935.595 kb on - strand, within SO0909 at 935.664 kb on - strand, within SO0909 at 935.736 kb on - strand, within SO0909 at 935.774 kb on + strand, within SO0909 at 935.793 kb on + strand at 935.801 kb on - strand at 935.921 kb on - strand at 935.953 kb on - strand at 936.182 kb on + strand at 936.182 kb on + strand at 936.200 kb on - strand at 936.220 kb on - strand at 936.324 kb on + strand, within SO0910 at 936.490 kb on - strand, within SO0910 at 936.559 kb on + strand, within SO0910 at 936.567 kb on - strand, within SO0910 at 936.686 kb on - strand, within SO0910 at 936.691 kb on - strand, within SO0910 at 936.753 kb on + strand, within SO0910 at 936.753 kb on + strand, within SO0910 at 936.753 kb on + strand, within SO0910 at 937.022 kb on + strand, within SO0910 at 937.186 kb on + strand at 937.468 kb on - strand at 937.562 kb on - strand at 937.562 kb on - strand at 937.562 kb on - strand at 937.666 kb on + strand at 937.674 kb on - strand at 937.677 kb on + strand at 937.688 kb on - strand at 937.700 kb on - strand at 937.833 kb on + strand at 937.845 kb on + strand at 937.845 kb on + strand at 937.849 kb on + strand at 937.849 kb on + strand at 937.850 kb on + strand at 937.853 kb on - strand at 937.853 kb on - strand at 937.853 kb on - strand at 937.857 kb on - strand at 937.858 kb on - strand at 937.860 kb on + strand at 937.863 kb on - strand at 937.945 kb on + strand at 937.946 kb on + strand at 937.946 kb on + strand at 937.946 kb on + strand at 937.947 kb on + strand at 937.947 kb on + strand at 937.952 kb on + strand at 937.953 kb on + strand at 937.953 kb on + strand at 937.953 kb on + strand at 937.953 kb on + strand at 937.953 kb on + strand at 937.953 kb on + strand at 937.953 kb on + strand at 937.953 kb on + strand at 937.959 kb on - strand at 937.959 kb on - strand at 937.959 kb on - strand at 937.959 kb on - strand at 937.959 kb on - strand at 937.960 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.961 kb on - strand at 937.977 kb on + strand at 938.025 kb on + strand at 938.025 kb on + strand at 938.025 kb on + strand at 938.025 kb on + strand at 938.025 kb on + strand at 938.025 kb on + strand at 938.025 kb on - strand at 938.025 kb on - strand at 938.030 kb on + strand at 938.033 kb on - strand at 938.033 kb on - strand at 938.033 kb on - strand at 938.034 kb on + strand at 938.038 kb on - strand at 938.038 kb on - strand at 938.038 kb on - strand at 938.038 kb on - strand at 938.038 kb on - strand at 938.040 kb on + strand at 938.041 kb on + strand at 938.041 kb on + strand at 938.041 kb on + strand at 938.041 kb on + strand at 938.041 kb on + strand at 938.042 kb on - strand at 938.047 kb on - strand at 938.048 kb on + strand at 938.048 kb on + strand at 938.048 kb on - strand at 938.049 kb on + strand at 938.049 kb on + strand at 938.049 kb on + strand at 938.049 kb on + strand at 938.049 kb on + strand at 938.049 kb on + strand at 938.049 kb on + strand at 938.049 kb on + strand at 938.049 kb on + strand at 938.049 kb on + strand at 938.049 kb on + strand at 938.049 kb on + strand at 938.049 kb on - strand at 938.049 kb on - strand at 938.049 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.057 kb on - strand at 938.060 kb on + strand at 938.068 kb on - strand at 938.068 kb on - strand at 938.081 kb on + strand at 938.089 kb on - strand, within SO_0911 at 938.090 kb on + strand, within SO_0911 at 938.090 kb on + strand, within SO_0911 at 938.090 kb on + strand, within SO_0911 at 938.093 kb on + strand, within SO_0911 at 938.093 kb on + strand, within SO_0911 at 938.093 kb on + strand, within SO_0911 at 938.093 kb on - strand, within SO_0911 at 938.095 kb on + strand, within SO_0911 at 938.095 kb on + strand, within SO_0911 at 938.095 kb on + strand, within SO_0911 at 938.095 kb on + strand, within SO_0911 at 938.098 kb on - strand, within SO_0911 at 938.098 kb on - strand, within SO_0911 at 938.101 kb on - strand, within SO_0911 at 938.101 kb on - strand, within SO_0911 at 938.101 kb on - strand, within SO_0911 at 938.101 kb on - strand, within SO_0911 at 938.101 kb on - strand, within SO_0911 at 938.101 kb on - strand, within SO_0911 at 938.101 kb on - strand, within SO_0911 at 938.101 kb on - strand, within SO_0911 at 938.103 kb on - strand, within SO_0911 at 938.103 kb on - strand, within SO_0911 at 938.103 kb on - strand, within SO_0911 at 938.103 kb on - strand, within SO_0911 at 938.103 kb on - strand, within SO_0911 at 938.103 kb on - strand, within SO_0911 at 938.103 kb on - strand, within SO_0911 at 938.104 kb on + strand, within SO_0911 at 938.111 kb on - strand, within SO_0911 at 938.160 kb on - strand, within SO_0911 at 938.196 kb on + strand, within SO_0911
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 935,197 + SO0908 0.88 +0.6 935,226 - +0.1 935,226 - -0.1 935,226 - -0.4 935,249 - -0.1 935,274 - +0.6 935,334 + +0.4 935,381 + SO0909 0.18 -0.3 935,390 + SO0909 0.20 +0.7 935,390 + SO0909 0.20 +0.4 935,397 + SO0909 0.21 +1.1 935,400 + SO0909 0.22 -0.4 935,415 + SO0909 0.24 +0.5 935,523 + SO0909 0.43 -0.3 935,523 + SO0909 0.43 +0.4 935,523 + SO0909 0.43 +0.0 935,523 + SO0909 0.43 +1.4 935,531 - SO0909 0.45 +0.4 935,531 - SO0909 0.45 -0.1 935,531 - SO0909 0.45 -1.0 935,531 - SO0909 0.45 +0.1 935,531 - SO0909 0.45 +0.1 935,531 - SO0909 0.45 +0.2 935,531 - SO0909 0.45 -0.1 935,531 - SO0909 0.45 +0.8 935,531 - SO0909 0.45 +0.4 935,531 - SO0909 0.45 +0.0 935,531 - SO0909 0.45 +0.1 935,531 - SO0909 0.45 +0.2 935,555 + SO0909 0.49 -0.3 935,577 + SO0909 0.53 -0.5 935,595 - SO0909 0.56 +0.4 935,664 - SO0909 0.68 -0.9 935,736 - SO0909 0.81 -0.3 935,774 + SO0909 0.88 -0.0 935,793 + +0.6 935,801 - -0.0 935,921 - +0.5 935,953 - +0.0 936,182 + +1.2 936,182 + +0.7 936,200 - -0.7 936,220 - +0.3 936,324 + SO0910 0.13 -0.1 936,490 - SO0910 0.29 -0.3 936,559 + SO0910 0.35 +0.2 936,567 - SO0910 0.36 -0.2 936,686 - SO0910 0.48 -1.0 936,691 - SO0910 0.48 -1.0 936,753 + SO0910 0.54 -0.1 936,753 + SO0910 0.54 +0.7 936,753 + SO0910 0.54 +0.1 937,022 + SO0910 0.80 +0.1 937,186 + -0.4 937,468 - +1.3 937,562 - +0.9 937,562 - -0.3 937,562 - -0.2 937,666 + -0.8 937,674 - -0.4 937,677 + +0.3 937,688 - +0.2 937,700 - +0.3 937,833 + -0.2 937,845 + +0.1 937,845 + +0.3 937,849 + +0.6 937,849 + +1.4 937,850 + +0.3 937,853 - -0.2 937,853 - +1.5 937,853 - +0.2 937,857 - -0.3 937,858 - -0.7 937,860 + +0.2 937,863 - +0.3 937,945 + -2.8 937,946 + -0.0 937,946 + +0.6 937,946 + -0.0 937,947 + -0.4 937,947 + -0.3 937,952 + -1.5 937,953 + -0.5 937,953 + -0.1 937,953 + +0.3 937,953 + +0.3 937,953 + +0.3 937,953 + -0.5 937,953 + +1.3 937,953 + -1.7 937,959 - +0.2 937,959 - +0.1 937,959 - +0.2 937,959 - -0.2 937,959 - -0.1 937,960 - +0.5 937,961 - -1.1 937,961 - -0.7 937,961 - -0.2 937,961 - -0.0 937,961 - +0.0 937,961 - +0.8 937,961 - -2.3 937,961 - -0.5 937,961 - +0.2 937,961 - -0.0 937,961 - -0.9 937,961 - -0.5 937,961 - +0.2 937,961 - -0.1 937,961 - +0.1 937,961 - +0.8 937,961 - +0.5 937,961 - +0.3 937,961 - -0.2 937,961 - +0.2 937,977 + -0.7 938,025 + +0.2 938,025 + +0.1 938,025 + +0.4 938,025 + +0.7 938,025 + +0.2 938,025 + +0.3 938,025 - -0.5 938,025 - -2.5 938,030 + -0.2 938,033 - +0.3 938,033 - +0.3 938,033 - +0.1 938,034 + -0.3 938,038 - +0.3 938,038 - +0.2 938,038 - +0.2 938,038 - -0.1 938,038 - +0.8 938,040 + -0.2 938,041 + +0.3 938,041 + -0.3 938,041 + +0.6 938,041 + +0.2 938,041 + -0.7 938,042 - +0.2 938,047 - -0.1 938,048 + -0.1 938,048 + -0.2 938,048 - -0.5 938,049 + +0.0 938,049 + +0.3 938,049 + -0.2 938,049 + +0.6 938,049 + +0.3 938,049 + +0.1 938,049 + -0.2 938,049 + +0.3 938,049 + +0.2 938,049 + +0.3 938,049 + +0.9 938,049 + +0.9 938,049 - +0.2 938,049 - +0.5 938,049 - -0.1 938,057 - -0.5 938,057 - -0.4 938,057 - +0.6 938,057 - -0.3 938,057 - -1.2 938,057 - -0.8 938,057 - -0.1 938,057 - -0.5 938,057 - -0.2 938,057 - -0.1 938,057 - +0.5 938,057 - +0.2 938,057 - -0.7 938,057 - +1.5 938,057 - +0.0 938,057 - -0.1 938,057 - +0.6 938,057 - +0.1 938,057 - +0.3 938,057 - -0.3 938,057 - -0.4 938,060 + -0.7 938,068 - -0.8 938,068 - -0.1 938,081 + +0.3 938,089 - SO_0911 0.11 +0.2 938,090 + SO_0911 0.11 +1.2 938,090 + SO_0911 0.11 +0.3 938,090 + SO_0911 0.11 +0.2 938,093 + SO_0911 0.12 -0.1 938,093 + SO_0911 0.12 +0.7 938,093 + SO_0911 0.12 -0.5 938,093 - SO_0911 0.12 +0.4 938,095 + SO_0911 0.12 +0.1 938,095 + SO_0911 0.12 +1.3 938,095 + SO_0911 0.12 +1.0 938,095 + SO_0911 0.12 +1.0 938,098 - SO_0911 0.12 -0.4 938,098 - SO_0911 0.12 +0.9 938,101 - SO_0911 0.13 -0.1 938,101 - SO_0911 0.13 -0.5 938,101 - SO_0911 0.13 +0.5 938,101 - SO_0911 0.13 +0.2 938,101 - SO_0911 0.13 -0.8 938,101 - SO_0911 0.13 +0.5 938,101 - SO_0911 0.13 -0.0 938,101 - SO_0911 0.13 -0.1 938,103 - SO_0911 0.13 -0.3 938,103 - SO_0911 0.13 -0.2 938,103 - SO_0911 0.13 +0.6 938,103 - SO_0911 0.13 +0.0 938,103 - SO_0911 0.13 -0.6 938,103 - SO_0911 0.13 +0.6 938,103 - SO_0911 0.13 -0.5 938,104 + SO_0911 0.13 -0.2 938,111 - SO_0911 0.14 +0.8 938,160 - SO_0911 0.22 +0.2 938,196 + SO_0911 0.28 -0.8
Or see this region's nucleotide sequence