Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hpt-1 and SO0808 are separated by 366 nucleotides SO0808 and azu are separated by 100 nucleotides azu and rbsK are separated by 169 nucleotides
SO0807: hpt-1 - hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file), at 819,812 to 820,378
hpt-1
SO0808: SO0808 - conserved hypothetical protein (NCBI ptt file), at 820,745 to 821,050
SO0808
SO0809: azu - azurin precursor (NCBI ptt file), at 821,151 to 821,627
azu
SO0810: rbsK - ribokinase (NCBI ptt file), at 821,797 to 822,708
rbsK
Position (kb) 821
822 Strain fitness (log2 ratio) -1
0
1
2 at 820.187 kb on - strand, within hpt-1 at 820.318 kb on - strand, within hpt-1 at 820.336 kb on + strand at 820.337 kb on + strand at 820.344 kb on - strand at 820.344 kb on - strand at 820.449 kb on + strand at 820.486 kb on + strand at 820.487 kb on + strand at 820.495 kb on - strand at 820.893 kb on - strand, within SO0808 at 820.896 kb on + strand, within SO0808 at 820.931 kb on - strand, within SO0808 at 820.935 kb on - strand, within SO0808 at 821.045 kb on + strand at 821.175 kb on - strand at 821.247 kb on + strand, within azu at 821.264 kb on - strand, within azu at 821.395 kb on + strand, within azu at 821.400 kb on + strand, within azu at 821.400 kb on + strand, within azu at 821.434 kb on + strand, within azu at 821.438 kb on + strand, within azu at 821.478 kb on + strand, within azu at 821.506 kb on + strand, within azu at 821.524 kb on - strand, within azu at 821.567 kb on + strand, within azu at 821.582 kb on + strand at 821.585 kb on - strand at 821.590 kb on - strand at 821.592 kb on + strand at 821.636 kb on + strand at 821.644 kb on - strand at 821.644 kb on - strand at 821.770 kb on + strand at 821.790 kb on + strand at 821.941 kb on + strand, within rbsK at 822.107 kb on + strand, within rbsK at 822.209 kb on + strand, within rbsK at 822.298 kb on + strand, within rbsK at 822.310 kb on + strand, within rbsK at 822.508 kb on + strand, within rbsK at 822.516 kb on - strand, within rbsK at 822.534 kb on - strand, within rbsK at 822.552 kb on + strand, within rbsK at 822.600 kb on + strand, within rbsK at 822.608 kb on - strand, within rbsK
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 820,187 - hpt-1 SO0807 0.66 -0.0 820,318 - hpt-1 SO0807 0.89 +0.2 820,336 + +0.2 820,337 + -0.1 820,344 - +0.4 820,344 - +0.3 820,449 + +0.2 820,486 + -0.8 820,487 + +0.5 820,495 - +0.1 820,893 - SO0808 0.48 -0.6 820,896 + SO0808 0.49 -1.3 820,931 - SO0808 0.61 +0.0 820,935 - SO0808 0.62 +0.6 821,045 + +0.4 821,175 - -1.2 821,247 + azu SO0809 0.20 -0.3 821,264 - azu SO0809 0.24 +0.4 821,395 + azu SO0809 0.51 +1.1 821,400 + azu SO0809 0.52 +0.0 821,400 + azu SO0809 0.52 -0.7 821,434 + azu SO0809 0.59 +0.5 821,438 + azu SO0809 0.60 +1.3 821,478 + azu SO0809 0.69 +0.1 821,506 + azu SO0809 0.74 +0.5 821,524 - azu SO0809 0.78 +1.9 821,567 + azu SO0809 0.87 -0.3 821,582 + -0.1 821,585 - +0.0 821,590 - +0.1 821,592 + -0.2 821,636 + +0.4 821,644 - -0.0 821,644 - +0.7 821,770 + -0.6 821,790 + -0.1 821,941 + rbsK SO0810 0.16 -0.2 822,107 + rbsK SO0810 0.34 -0.7 822,209 + rbsK SO0810 0.45 +0.4 822,298 + rbsK SO0810 0.55 +0.0 822,310 + rbsK SO0810 0.56 -0.9 822,508 + rbsK SO0810 0.78 -0.2 822,516 - rbsK SO0810 0.79 +0.0 822,534 - rbsK SO0810 0.81 -0.6 822,552 + rbsK SO0810 0.83 +0.7 822,600 + rbsK SO0810 0.88 +0.3 822,608 - rbsK SO0810 0.89 -0.4
Or see this region's nucleotide sequence