Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09350 and PGA1_c09360 are separated by 214 nucleotides PGA1_c09360 and PGA1_c09370 are separated by 214 nucleotides PGA1_c09370 and PGA1_c09380 are separated by 67 nucleotides
PGA1_c09350: PGA1_c09350 - aminotransferase class-III, at 954,641 to 955,993
_c09350
PGA1_c09360: PGA1_c09360 - tRNA-Gly, at 956,208 to 956,282
_c09360
PGA1_c09370: PGA1_c09370 - tRNA-Gly, at 956,497 to 956,571
_c09370
PGA1_c09380: PGA1_c09380 - putative type 2 restriction enzyme naeI, at 956,639 to 957,550
_c09380
Position (kb) 956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 955.502 kb on + strand, within PGA1_c09350 at 955.587 kb on - strand, within PGA1_c09350 at 955.666 kb on - strand, within PGA1_c09350 at 955.703 kb on + strand, within PGA1_c09350 at 955.783 kb on + strand, within PGA1_c09350 at 955.845 kb on + strand, within PGA1_c09350 at 955.860 kb on + strand at 955.863 kb on - strand at 955.873 kb on - strand at 955.890 kb on - strand at 955.905 kb on + strand at 955.923 kb on + strand at 955.933 kb on + strand at 955.933 kb on + strand at 955.933 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.956 kb on - strand at 955.999 kb on + strand at 956.002 kb on - strand at 956.065 kb on - strand at 956.135 kb on + strand at 956.135 kb on + strand at 956.135 kb on + strand at 956.143 kb on - strand at 956.143 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.332 kb on - strand at 956.384 kb on - strand at 956.384 kb on - strand at 956.384 kb on - strand at 956.469 kb on + strand at 956.493 kb on - strand at 956.620 kb on - strand at 956.701 kb on + strand at 956.763 kb on - strand, within PGA1_c09380 at 956.763 kb on - strand, within PGA1_c09380 at 956.768 kb on + strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.824 kb on + strand, within PGA1_c09380 at 956.891 kb on - strand, within PGA1_c09380 at 956.918 kb on + strand, within PGA1_c09380 at 956.926 kb on - strand, within PGA1_c09380 at 956.926 kb on - strand, within PGA1_c09380 at 956.928 kb on + strand, within PGA1_c09380 at 956.931 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.971 kb on - strand, within PGA1_c09380 at 957.021 kb on + strand, within PGA1_c09380 at 957.021 kb on + strand, within PGA1_c09380 at 957.029 kb on - strand, within PGA1_c09380 at 957.061 kb on - strand, within PGA1_c09380 at 957.098 kb on - strand, within PGA1_c09380 at 957.103 kb on - strand, within PGA1_c09380 at 957.105 kb on + strand, within PGA1_c09380 at 957.171 kb on - strand, within PGA1_c09380 at 957.180 kb on + strand, within PGA1_c09380 at 957.255 kb on - strand, within PGA1_c09380 at 957.307 kb on + strand, within PGA1_c09380 at 957.358 kb on - strand, within PGA1_c09380 at 957.380 kb on - strand, within PGA1_c09380 at 957.445 kb on - strand, within PGA1_c09380 at 957.451 kb on + strand, within PGA1_c09380 at 957.468 kb on + strand at 957.496 kb on - strand at 957.516 kb on + strand at 957.516 kb on + strand at 957.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 955,502 + PGA1_c09350 0.64 -2.6 955,587 - PGA1_c09350 0.70 -3.4 955,666 - PGA1_c09350 0.76 -0.7 955,703 + PGA1_c09350 0.78 -0.4 955,783 + PGA1_c09350 0.84 -0.5 955,845 + PGA1_c09350 0.89 -2.4 955,860 + -0.6 955,863 - +0.9 955,873 - +1.0 955,890 - +0.4 955,905 + -0.2 955,923 + -0.8 955,933 + -3.0 955,933 + -0.3 955,933 + -0.5 955,938 + +2.9 955,938 + -0.6 955,938 + +1.8 955,938 + -1.5 955,938 + +0.6 955,938 + +2.0 955,941 - -2.4 955,941 - -1.7 955,941 - +0.4 955,941 - -1.7 955,946 - -1.5 955,946 - -1.7 955,946 - +1.0 955,946 - +0.4 955,946 - +0.9 955,946 - +1.4 955,946 - +1.3 955,956 - -0.1 955,999 + -0.1 956,002 - -2.0 956,065 - +0.8 956,135 + +1.5 956,135 + +2.0 956,135 + -2.4 956,143 - +1.7 956,143 - -0.3 956,146 - -2.0 956,146 - +0.5 956,146 - +1.1 956,146 - +2.1 956,332 - +1.1 956,384 - +0.9 956,384 - -0.4 956,384 - +1.0 956,469 + +1.1 956,493 - -0.5 956,620 - -0.1 956,701 + +0.3 956,763 - PGA1_c09380 0.14 +0.9 956,763 - PGA1_c09380 0.14 +0.0 956,768 + PGA1_c09380 0.14 -0.1 956,776 - PGA1_c09380 0.15 +0.2 956,776 - PGA1_c09380 0.15 +2.0 956,776 - PGA1_c09380 0.15 +0.6 956,824 + PGA1_c09380 0.20 +0.6 956,891 - PGA1_c09380 0.28 +1.8 956,918 + PGA1_c09380 0.31 -1.7 956,926 - PGA1_c09380 0.31 +0.3 956,926 - PGA1_c09380 0.31 -0.2 956,928 + PGA1_c09380 0.32 +1.6 956,931 - PGA1_c09380 0.32 +2.2 956,936 - PGA1_c09380 0.33 -0.3 956,936 - PGA1_c09380 0.33 -2.5 956,936 - PGA1_c09380 0.33 +1.0 956,971 - PGA1_c09380 0.36 -2.5 957,021 + PGA1_c09380 0.42 -0.4 957,021 + PGA1_c09380 0.42 +1.3 957,029 - PGA1_c09380 0.43 -3.0 957,061 - PGA1_c09380 0.46 +0.4 957,098 - PGA1_c09380 0.50 +1.8 957,103 - PGA1_c09380 0.51 -3.0 957,105 + PGA1_c09380 0.51 +0.8 957,171 - PGA1_c09380 0.58 +1.9 957,180 + PGA1_c09380 0.59 +2.3 957,255 - PGA1_c09380 0.68 +2.1 957,307 + PGA1_c09380 0.73 -1.5 957,358 - PGA1_c09380 0.79 -2.9 957,380 - PGA1_c09380 0.81 +0.6 957,445 - PGA1_c09380 0.88 +1.3 957,451 + PGA1_c09380 0.89 -0.3 957,468 + -1.5 957,496 - +1.7 957,516 + -0.1 957,516 + +2.1 957,519 - -2.5
Or see this region's nucleotide sequence