Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00900

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c00880 and PGA1_c00890 overlap by 4 nucleotidesPGA1_c00890 and PGA1_c00900 are separated by 69 nucleotidesPGA1_c00900 and PGA1_c00910 are separated by 12 nucleotidesPGA1_c00910 and PGA1_c00920 are separated by 17 nucleotidesPGA1_c00920 and PGA1_c00930 overlap by 4 nucleotides PGA1_c00880: PGA1_c00880 - peptide deformylase Def, at 86,747 to 87,256 _c00880 PGA1_c00890: PGA1_c00890 - peptide deformylase Def, at 87,253 to 87,750 _c00890 PGA1_c00900: PGA1_c00900 - methionyl-tRNA formyltransferase Fmt, at 87,820 to 88,725 _c00900 PGA1_c00910: PGA1_c00910 - hypothetical protein, at 88,738 to 88,974 _c00910 PGA1_c00920: PGA1_c00920 - putative transporter, required for glycine utilization (from data), at 88,992 to 89,615 _c00920 PGA1_c00930: PGA1_c00930 - ribonuclease H, at 89,612 to 90,079 _c00930 Position (kb) 87 88 89Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 86.889 kb on + strand, within PGA1_c00880at 86.934 kb on + strand, within PGA1_c00880at 86.942 kb on - strand, within PGA1_c00880at 86.957 kb on + strand, within PGA1_c00880at 86.957 kb on + strand, within PGA1_c00880at 86.962 kb on + strand, within PGA1_c00880at 86.965 kb on - strand, within PGA1_c00880at 86.982 kb on + strand, within PGA1_c00880at 87.045 kb on + strand, within PGA1_c00880at 87.045 kb on + strand, within PGA1_c00880at 87.053 kb on - strand, within PGA1_c00880at 87.053 kb on - strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.117 kb on + strand, within PGA1_c00880at 87.125 kb on - strand, within PGA1_c00880at 87.145 kb on - strand, within PGA1_c00880at 87.162 kb on + strand, within PGA1_c00880at 87.162 kb on + strand, within PGA1_c00880at 87.187 kb on - strand, within PGA1_c00880at 87.189 kb on - strand, within PGA1_c00880at 87.190 kb on + strand, within PGA1_c00880at 87.195 kb on + strand, within PGA1_c00880at 87.203 kb on - strand, within PGA1_c00880at 87.249 kb on + strandat 87.257 kb on - strandat 87.257 kb on - strandat 87.268 kb on + strandat 87.273 kb on + strandat 87.281 kb on - strandat 87.310 kb on - strand, within PGA1_c00890at 87.313 kb on - strand, within PGA1_c00890at 87.341 kb on + strand, within PGA1_c00890at 87.370 kb on - strand, within PGA1_c00890at 87.383 kb on + strand, within PGA1_c00890at 87.395 kb on + strand, within PGA1_c00890at 87.430 kb on - strand, within PGA1_c00890at 87.453 kb on + strand, within PGA1_c00890at 87.463 kb on - strand, within PGA1_c00890at 87.474 kb on - strand, within PGA1_c00890at 87.526 kb on + strand, within PGA1_c00890at 87.527 kb on + strand, within PGA1_c00890at 87.535 kb on - strand, within PGA1_c00890at 87.563 kb on - strand, within PGA1_c00890at 87.592 kb on + strand, within PGA1_c00890at 87.592 kb on + strand, within PGA1_c00890at 87.592 kb on + strand, within PGA1_c00890at 87.610 kb on - strand, within PGA1_c00890at 87.696 kb on + strand, within PGA1_c00890at 87.704 kb on - strandat 87.715 kb on + strandat 87.715 kb on + strandat 87.715 kb on + strandat 87.792 kb on + strandat 87.803 kb on + strandat 87.803 kb on + strandat 87.803 kb on + strandat 87.805 kb on + strandat 87.812 kb on + strandat 88.719 kb on + strandat 88.719 kb on - strandat 88.727 kb on + strandat 88.727 kb on - strandat 88.758 kb on - strandat 88.760 kb on + strandat 88.876 kb on + strand, within PGA1_c00910at 88.884 kb on - strand, within PGA1_c00910at 89.068 kb on - strand, within PGA1_c00920at 89.072 kb on + strand, within PGA1_c00920at 89.078 kb on - strand, within PGA1_c00920at 89.080 kb on - strand, within PGA1_c00920at 89.082 kb on + strand, within PGA1_c00920at 89.082 kb on + strand, within PGA1_c00920at 89.082 kb on + strand, within PGA1_c00920at 89.088 kb on - strand, within PGA1_c00920at 89.116 kb on - strand, within PGA1_c00920at 89.116 kb on - strand, within PGA1_c00920at 89.139 kb on - strand, within PGA1_c00920at 89.186 kb on - strand, within PGA1_c00920at 89.188 kb on + strand, within PGA1_c00920at 89.271 kb on + strand, within PGA1_c00920at 89.271 kb on + strand, within PGA1_c00920at 89.271 kb on + strand, within PGA1_c00920at 89.279 kb on - strand, within PGA1_c00920at 89.302 kb on - strand, within PGA1_c00920at 89.306 kb on - strand, within PGA1_c00920at 89.369 kb on - strand, within PGA1_c00920at 89.445 kb on - strand, within PGA1_c00920at 89.558 kb on + strandat 89.558 kb on + strandat 89.576 kb on + strandat 89.579 kb on + strandat 89.600 kb on + strandat 89.609 kb on - strandat 89.639 kb on - strandat 89.640 kb on - strandat 89.647 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
86,889 + PGA1_c00880 0.28 -0.6
86,934 + PGA1_c00880 0.37 +1.2
86,942 - PGA1_c00880 0.38 -2.9
86,957 + PGA1_c00880 0.41 -0.8
86,957 + PGA1_c00880 0.41 -4.0
86,962 + PGA1_c00880 0.42 +0.5
86,965 - PGA1_c00880 0.43 +1.2
86,982 + PGA1_c00880 0.46 -2.9
87,045 + PGA1_c00880 0.58 +0.1
87,045 + PGA1_c00880 0.58 -0.5
87,053 - PGA1_c00880 0.60 -0.2
87,053 - PGA1_c00880 0.60 -1.9
87,117 + PGA1_c00880 0.73 -2.6
87,117 + PGA1_c00880 0.73 -2.1
87,117 + PGA1_c00880 0.73 -0.6
87,117 + PGA1_c00880 0.73 -0.0
87,125 - PGA1_c00880 0.74 -0.0
87,145 - PGA1_c00880 0.78 +1.2
87,162 + PGA1_c00880 0.81 +1.4
87,162 + PGA1_c00880 0.81 -3.0
87,187 - PGA1_c00880 0.86 -1.6
87,189 - PGA1_c00880 0.87 -2.5
87,190 + PGA1_c00880 0.87 -0.1
87,195 + PGA1_c00880 0.88 -2.4
87,203 - PGA1_c00880 0.89 +1.1
87,249 + -1.4
87,257 - -0.0
87,257 - -0.1
87,268 + +2.3
87,273 + -1.2
87,281 - -1.0
87,310 - PGA1_c00890 0.11 -3.1
87,313 - PGA1_c00890 0.12 +2.3
87,341 + PGA1_c00890 0.18 -0.3
87,370 - PGA1_c00890 0.23 -0.2
87,383 + PGA1_c00890 0.26 +1.8
87,395 + PGA1_c00890 0.29 -0.1
87,430 - PGA1_c00890 0.36 -0.7
87,453 + PGA1_c00890 0.40 +1.1
87,463 - PGA1_c00890 0.42 +0.8
87,474 - PGA1_c00890 0.44 -0.1
87,526 + PGA1_c00890 0.55 +0.7
87,527 + PGA1_c00890 0.55 -1.5
87,535 - PGA1_c00890 0.57 +0.7
87,563 - PGA1_c00890 0.62 -0.7
87,592 + PGA1_c00890 0.68 +0.9
87,592 + PGA1_c00890 0.68 -0.3
87,592 + PGA1_c00890 0.68 -2.2
87,610 - PGA1_c00890 0.72 +0.7
87,696 + PGA1_c00890 0.89 -3.1
87,704 - -1.8
87,715 + -1.0
87,715 + -2.3
87,715 + -1.9
87,792 + +1.3
87,803 + -0.3
87,803 + -3.2
87,803 + +1.0
87,805 + +0.7
87,812 + -0.4
88,719 + +1.1
88,719 - +0.1
88,727 + -0.1
88,727 - +0.8
88,758 - -1.9
88,760 + -0.9
88,876 + PGA1_c00910 0.58 +2.3
88,884 - PGA1_c00910 0.62 +0.1
89,068 - PGA1_c00920 0.12 +0.1
89,072 + PGA1_c00920 0.13 -0.4
89,078 - PGA1_c00920 0.14 -0.5
89,080 - PGA1_c00920 0.14 +0.6
89,082 + PGA1_c00920 0.14 +0.6
89,082 + PGA1_c00920 0.14 -3.3
89,082 + PGA1_c00920 0.14 +1.4
89,088 - PGA1_c00920 0.15 +0.6
89,116 - PGA1_c00920 0.20 -1.4
89,116 - PGA1_c00920 0.20 -0.0
89,139 - PGA1_c00920 0.24 -2.2
89,186 - PGA1_c00920 0.31 -0.7
89,188 + PGA1_c00920 0.31 -1.6
89,271 + PGA1_c00920 0.45 +0.4
89,271 + PGA1_c00920 0.45 -2.3
89,271 + PGA1_c00920 0.45 -2.6
89,279 - PGA1_c00920 0.46 -1.0
89,302 - PGA1_c00920 0.50 +0.2
89,306 - PGA1_c00920 0.50 -0.3
89,369 - PGA1_c00920 0.60 +0.0
89,445 - PGA1_c00920 0.73 +0.0
89,558 + -2.5
89,558 + -1.2
89,576 + +2.0
89,579 + +0.6
89,600 + -3.1
89,609 - -0.6
89,639 - -3.1
89,640 - +0.7
89,647 + -2.8

Or see this region's nucleotide sequence