Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_826 and HP15_827 are separated by 102 nucleotides HP15_827 and HP15_828 are separated by 178 nucleotides HP15_828 and HP15_829 are separated by 48 nucleotides
HP15_826: HP15_826 - lipoprotein, at 843,763 to 844,641
_826
HP15_827: HP15_827 - conserved hypothetical protein, membrane, at 844,744 to 845,025
_827
HP15_828: HP15_828 - conserved hypothetical protein, at 845,204 to 846,595
_828
HP15_829: HP15_829 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 846,644 to 848,146
_829
Position (kb)
845
846
847 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 844.209 kb on + strand, within HP15_826 at 844.234 kb on + strand, within HP15_826 at 844.234 kb on + strand, within HP15_826 at 844.242 kb on - strand, within HP15_826 at 844.265 kb on - strand, within HP15_826 at 844.411 kb on + strand, within HP15_826 at 844.465 kb on - strand, within HP15_826 at 845.126 kb on + strand at 845.134 kb on - strand at 845.134 kb on - strand at 845.144 kb on - strand at 845.145 kb on - strand at 845.220 kb on + strand at 845.324 kb on - strand at 845.581 kb on + strand, within HP15_828 at 845.589 kb on - strand, within HP15_828 at 845.589 kb on - strand, within HP15_828 at 845.645 kb on - strand, within HP15_828 at 845.694 kb on + strand, within HP15_828 at 845.814 kb on + strand, within HP15_828 at 845.924 kb on + strand, within HP15_828 at 845.924 kb on + strand, within HP15_828 at 845.932 kb on - strand, within HP15_828 at 845.956 kb on - strand, within HP15_828 at 846.099 kb on - strand, within HP15_828 at 846.157 kb on - strand, within HP15_828 at 846.172 kb on + strand, within HP15_828 at 846.426 kb on - strand, within HP15_828 at 846.475 kb on + strand at 846.493 kb on - strand at 846.563 kb on - strand at 846.592 kb on + strand at 846.658 kb on + strand at 847.345 kb on + strand, within HP15_829 at 847.502 kb on - strand, within HP15_829 at 847.536 kb on + strand, within HP15_829
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 844,209 + HP15_826 0.51 -0.7 844,234 + HP15_826 0.54 +0.1 844,234 + HP15_826 0.54 -0.9 844,242 - HP15_826 0.54 +0.4 844,265 - HP15_826 0.57 -0.2 844,411 + HP15_826 0.74 +0.3 844,465 - HP15_826 0.80 +1.0 845,126 + +0.2 845,134 - +0.5 845,134 - +0.8 845,144 - -0.7 845,145 - -2.6 845,220 + +0.8 845,324 - -1.3 845,581 + HP15_828 0.27 -3.7 845,589 - HP15_828 0.28 -0.7 845,589 - HP15_828 0.28 -0.9 845,645 - HP15_828 0.32 -0.6 845,694 + HP15_828 0.35 +0.0 845,814 + HP15_828 0.44 -0.1 845,924 + HP15_828 0.52 -1.7 845,924 + HP15_828 0.52 -1.8 845,932 - HP15_828 0.52 -1.2 845,956 - HP15_828 0.54 +0.9 846,099 - HP15_828 0.64 -4.0 846,157 - HP15_828 0.68 -0.6 846,172 + HP15_828 0.70 -0.2 846,426 - HP15_828 0.88 +0.7 846,475 + +0.1 846,493 - -4.0 846,563 - -0.8 846,592 + +0.7 846,658 + +0.0 847,345 + HP15_829 0.47 -0.9 847,502 - HP15_829 0.57 +1.2 847,536 + HP15_829 0.59 -2.2
Or see this region's nucleotide sequence