Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_81 and HP15_82 are separated by 50 nucleotides HP15_82 and HP15_83 are separated by 510 nucleotides HP15_83 and HP15_84 are separated by 71 nucleotides HP15_84 and HP15_85 are separated by 57 nucleotides
HP15_81: HP15_81 - transcriptional regulator, Cro/CI family protein-like protein, at 90,081 to 90,260
_81
HP15_82: HP15_82 - hypothetical protein, at 90,311 to 90,448
_82
HP15_83: HP15_83 - electron transport protein SCO1/SenC, at 90,959 to 91,531
_83
HP15_84: HP15_84 - conserved hypothetical protein, at 91,603 to 91,959
_84
HP15_85: HP15_85 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 92,017 to 92,715
_85
Position (kb) 90
91
92 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 90.270 kb on - strand at 90.386 kb on - strand, within HP15_82 at 90.407 kb on - strand, within HP15_82 at 90.410 kb on + strand, within HP15_82 at 90.428 kb on + strand, within HP15_82 at 90.447 kb on + strand at 90.447 kb on + strand at 90.453 kb on - strand at 90.453 kb on - strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.518 kb on - strand at 90.562 kb on - strand at 90.594 kb on - strand at 90.652 kb on - strand at 90.659 kb on - strand at 90.802 kb on + strand at 90.802 kb on + strand at 90.858 kb on - strand at 90.897 kb on - strand at 90.941 kb on + strand at 90.989 kb on + strand at 91.044 kb on - strand, within HP15_83 at 91.044 kb on - strand, within HP15_83 at 91.079 kb on + strand, within HP15_83 at 91.144 kb on + strand, within HP15_83 at 91.144 kb on + strand, within HP15_83 at 91.152 kb on - strand, within HP15_83 at 91.159 kb on + strand, within HP15_83 at 91.160 kb on - strand, within HP15_83 at 91.167 kb on - strand, within HP15_83 at 91.233 kb on - strand, within HP15_83 at 91.238 kb on + strand, within HP15_83 at 91.272 kb on - strand, within HP15_83 at 91.564 kb on + strand at 91.572 kb on - strand at 91.597 kb on - strand at 91.627 kb on + strand at 91.707 kb on + strand, within HP15_84 at 91.741 kb on + strand, within HP15_84 at 91.744 kb on - strand, within HP15_84 at 91.749 kb on - strand, within HP15_84 at 91.756 kb on + strand, within HP15_84 at 91.756 kb on + strand, within HP15_84 at 91.804 kb on + strand, within HP15_84 at 91.820 kb on - strand, within HP15_84 at 91.892 kb on + strand, within HP15_84 at 91.969 kb on - strand at 92.159 kb on - strand, within HP15_85 at 92.272 kb on + strand, within HP15_85 at 92.319 kb on + strand, within HP15_85 at 92.360 kb on + strand, within HP15_85 at 92.368 kb on - strand, within HP15_85 at 92.368 kb on - strand, within HP15_85 at 92.520 kb on + strand, within HP15_85 at 92.520 kb on + strand, within HP15_85
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 90,270 - -1.3 90,386 - HP15_82 0.54 -0.5 90,407 - HP15_82 0.70 -0.0 90,410 + HP15_82 0.72 +0.3 90,428 + HP15_82 0.85 +0.2 90,447 + -2.2 90,447 + +0.3 90,453 - +0.1 90,453 - -0.5 90,483 + -2.4 90,483 + +0.3 90,483 + +0.7 90,483 + +0.6 90,483 + -0.1 90,483 + -0.9 90,483 + +1.5 90,483 + -1.8 90,491 - -0.8 90,491 - -0.0 90,491 - -4.1 90,491 - -0.4 90,491 - -2.4 90,491 - -1.0 90,518 - +1.0 90,562 - +0.2 90,594 - -0.3 90,652 - -1.9 90,659 - -0.4 90,802 + +0.4 90,802 + -0.0 90,858 - +2.5 90,897 - +0.4 90,941 + -0.4 90,989 + -0.5 91,044 - HP15_83 0.15 -0.2 91,044 - HP15_83 0.15 -0.1 91,079 + HP15_83 0.21 +0.4 91,144 + HP15_83 0.32 -0.3 91,144 + HP15_83 0.32 -0.1 91,152 - HP15_83 0.34 +0.5 91,159 + HP15_83 0.35 -3.6 91,160 - HP15_83 0.35 +1.3 91,167 - HP15_83 0.36 +0.4 91,233 - HP15_83 0.48 +1.6 91,238 + HP15_83 0.49 +0.5 91,272 - HP15_83 0.55 +1.2 91,564 + -1.4 91,572 - +0.2 91,597 - -1.4 91,627 + -1.1 91,707 + HP15_84 0.29 +2.8 91,741 + HP15_84 0.39 +0.9 91,744 - HP15_84 0.39 -0.0 91,749 - HP15_84 0.41 -2.0 91,756 + HP15_84 0.43 -0.2 91,756 + HP15_84 0.43 +0.2 91,804 + HP15_84 0.56 -0.4 91,820 - HP15_84 0.61 +1.2 91,892 + HP15_84 0.81 -3.6 91,969 - +2.4 92,159 - HP15_85 0.20 -0.3 92,272 + HP15_85 0.36 -0.8 92,319 + HP15_85 0.43 -0.2 92,360 + HP15_85 0.49 +0.8 92,368 - HP15_85 0.50 -0.2 92,368 - HP15_85 0.50 +2.4 92,520 + HP15_85 0.72 +0.0 92,520 + HP15_85 0.72 -0.3
Or see this region's nucleotide sequence