Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_796 and HP15_797 are separated by 201 nucleotides HP15_797 and HP15_798 are separated by 31 nucleotides HP15_798 and HP15_799 are separated by 133 nucleotides
HP15_796: HP15_796 - signal transduction protein, at 811,087 to 812,457
_796
HP15_797: HP15_797 - adenylate kinase, at 812,659 to 813,312
_797
HP15_798: HP15_798 - peptidase M22, glycoprotease, at 813,344 to 814,039
_798
HP15_799: HP15_799 - undecaprenyl pyrophosphate phosphatase-like protein, at 814,173 to 814,535
_799
Position (kb) 812
813
814 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 811.698 kb on + strand, within HP15_796 at 811.715 kb on - strand, within HP15_796 at 811.816 kb on - strand, within HP15_796 at 811.816 kb on - strand, within HP15_796 at 811.843 kb on + strand, within HP15_796 at 811.846 kb on - strand, within HP15_796 at 811.868 kb on + strand, within HP15_796 at 811.920 kb on + strand, within HP15_796 at 811.921 kb on + strand, within HP15_796 at 811.929 kb on - strand, within HP15_796 at 811.957 kb on - strand, within HP15_796 at 812.019 kb on + strand, within HP15_796 at 812.102 kb on + strand, within HP15_796 at 812.207 kb on - strand, within HP15_796 at 812.305 kb on - strand, within HP15_796 at 812.340 kb on + strand at 812.436 kb on + strand at 812.464 kb on + strand at 814.039 kb on - strand at 814.108 kb on - strand at 814.232 kb on + strand, within HP15_799
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 811,698 + HP15_796 0.45 -0.3 811,715 - HP15_796 0.46 -0.3 811,816 - HP15_796 0.53 +0.1 811,816 - HP15_796 0.53 -0.1 811,843 + HP15_796 0.55 +0.9 811,846 - HP15_796 0.55 +0.6 811,868 + HP15_796 0.57 -0.6 811,920 + HP15_796 0.61 -3.3 811,921 + HP15_796 0.61 -0.3 811,929 - HP15_796 0.61 +0.5 811,957 - HP15_796 0.63 +2.6 812,019 + HP15_796 0.68 -1.5 812,102 + HP15_796 0.74 +0.3 812,207 - HP15_796 0.82 -0.7 812,305 - HP15_796 0.89 -2.3 812,340 + +2.6 812,436 + -0.2 812,464 + -0.3 814,039 - +1.4 814,108 - +0.4 814,232 + HP15_799 0.16 -0.7
Or see this region's nucleotide sequence