Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_784 and HP15_785 overlap by 1 nucleotides HP15_785 and HP15_786 are separated by 7 nucleotides HP15_786 and HP15_787 overlap by 11 nucleotides HP15_787 and HP15_788 are separated by 12 nucleotides
HP15_784: HP15_784 - ribonuclease 3, at 795,909 to 796,598
_784
HP15_785: HP15_785 - GTP-binding protein Era-like protein, at 796,598 to 797,515
_785
HP15_786: HP15_786 - DNA repair protein RecO, at 797,523 to 798,251
_786
HP15_787: HP15_787 - pyridoxal phosphate biosynthetic protein PdxJ, at 798,241 to 798,981
_787
HP15_788: HP15_788 - multi-sensor hybrid histidine kinase, at 798,994 to 801,867
_788
Position (kb) 797
798
799 Strain fitness (log2 ratio) -2
-1
0
1 at 797.520 kb on + strand at 797.528 kb on - strand at 797.538 kb on - strand at 797.548 kb on - strand at 797.662 kb on + strand, within HP15_786 at 797.723 kb on - strand, within HP15_786 at 797.736 kb on - strand, within HP15_786 at 797.870 kb on + strand, within HP15_786 at 798.203 kb on - strand at 798.994 kb on - strand at 798.999 kb on - strand at 798.999 kb on - strand at 798.999 kb on - strand at 799.063 kb on - strand at 799.063 kb on - strand at 799.079 kb on + strand at 799.079 kb on + strand at 799.087 kb on - strand at 799.092 kb on + strand at 799.134 kb on - strand at 799.167 kb on - strand at 799.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 797,520 + -0.1 797,528 - +0.0 797,538 - +0.8 797,548 - +1.4 797,662 + HP15_786 0.19 -2.1 797,723 - HP15_786 0.27 -2.5 797,736 - HP15_786 0.29 -1.5 797,870 + HP15_786 0.48 -1.2 798,203 - +0.5 798,994 - -0.5 798,999 - -0.8 798,999 - +0.6 798,999 - +0.5 799,063 - +0.4 799,063 - -0.2 799,079 + -0.0 799,079 + -0.1 799,087 - -0.4 799,092 + -0.5 799,134 - +0.3 799,167 - -0.1 799,219 - -0.2
Or see this region's nucleotide sequence