Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07770

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07760 and PGA1_c07770 are separated by 12 nucleotidesPGA1_c07770 and PGA1_c07780 are separated by 116 nucleotides PGA1_c07760: PGA1_c07760 - TRAP transporter, subunit DctM, at 803,141 to 804,469 _c07760 PGA1_c07770: PGA1_c07770 - TRAP transporter, subunit DctQ, at 804,482 to 804,994 _c07770 PGA1_c07780: PGA1_c07780 - TRAP transporter, subunit DctP, at 805,111 to 806,256 _c07780 Position (kb) 804 805Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 803.515 kb on + strand, within PGA1_c07760at 803.543 kb on + strand, within PGA1_c07760at 803.550 kb on + strand, within PGA1_c07760at 803.551 kb on - strand, within PGA1_c07760at 803.563 kb on + strand, within PGA1_c07760at 803.587 kb on + strand, within PGA1_c07760at 803.587 kb on + strand, within PGA1_c07760at 803.595 kb on - strand, within PGA1_c07760at 803.603 kb on - strand, within PGA1_c07760at 803.656 kb on + strand, within PGA1_c07760at 803.672 kb on - strand, within PGA1_c07760at 803.683 kb on - strand, within PGA1_c07760at 803.710 kb on + strand, within PGA1_c07760at 803.713 kb on - strand, within PGA1_c07760at 803.755 kb on + strand, within PGA1_c07760at 803.788 kb on + strand, within PGA1_c07760at 803.815 kb on + strand, within PGA1_c07760at 803.815 kb on + strand, within PGA1_c07760at 803.815 kb on + strand, within PGA1_c07760at 803.823 kb on - strand, within PGA1_c07760at 803.841 kb on + strand, within PGA1_c07760at 803.903 kb on + strand, within PGA1_c07760at 803.906 kb on - strand, within PGA1_c07760at 803.947 kb on - strand, within PGA1_c07760at 804.023 kb on + strand, within PGA1_c07760at 804.126 kb on + strand, within PGA1_c07760at 804.139 kb on - strand, within PGA1_c07760at 804.139 kb on - strand, within PGA1_c07760at 804.173 kb on + strand, within PGA1_c07760at 804.181 kb on - strand, within PGA1_c07760at 804.260 kb on + strand, within PGA1_c07760at 804.265 kb on + strand, within PGA1_c07760at 804.267 kb on - strand, within PGA1_c07760at 804.282 kb on - strand, within PGA1_c07760at 804.345 kb on - strandat 804.436 kb on + strandat 804.442 kb on + strandat 804.531 kb on - strandat 804.552 kb on + strand, within PGA1_c07770at 804.621 kb on - strand, within PGA1_c07770at 804.659 kb on + strand, within PGA1_c07770at 804.659 kb on + strand, within PGA1_c07770at 804.667 kb on - strand, within PGA1_c07770at 804.667 kb on - strand, within PGA1_c07770at 804.667 kb on - strand, within PGA1_c07770at 804.667 kb on - strand, within PGA1_c07770at 804.711 kb on - strand, within PGA1_c07770at 804.729 kb on + strand, within PGA1_c07770at 804.737 kb on - strand, within PGA1_c07770at 804.754 kb on + strand, within PGA1_c07770at 804.754 kb on + strand, within PGA1_c07770at 804.754 kb on + strand, within PGA1_c07770at 804.754 kb on + strand, within PGA1_c07770at 804.754 kb on + strand, within PGA1_c07770at 804.754 kb on + strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.762 kb on - strand, within PGA1_c07770at 804.767 kb on - strand, within PGA1_c07770at 804.824 kb on - strand, within PGA1_c07770at 804.859 kb on + strand, within PGA1_c07770at 804.859 kb on + strand, within PGA1_c07770at 804.881 kb on + strand, within PGA1_c07770at 804.918 kb on + strand, within PGA1_c07770at 804.941 kb on + strand, within PGA1_c07770at 804.941 kb on + strand, within PGA1_c07770at 804.950 kb on - strandat 805.007 kb on + strandat 805.031 kb on + strandat 805.039 kb on - strandat 805.070 kb on - strandat 805.108 kb on + strandat 805.137 kb on - strandat 805.137 kb on - strandat 805.145 kb on + strandat 805.196 kb on + strandat 805.196 kb on + strandat 805.204 kb on - strandat 805.237 kb on - strand, within PGA1_c07780at 805.283 kb on + strand, within PGA1_c07780at 805.286 kb on - strand, within PGA1_c07780at 805.289 kb on + strand, within PGA1_c07780at 805.289 kb on + strand, within PGA1_c07780at 805.297 kb on - strand, within PGA1_c07780at 805.315 kb on + strand, within PGA1_c07780at 805.342 kb on + strand, within PGA1_c07780at 805.381 kb on + strand, within PGA1_c07780at 805.381 kb on + strand, within PGA1_c07780at 805.381 kb on + strand, within PGA1_c07780at 805.381 kb on + strand, within PGA1_c07780at 805.389 kb on - strand, within PGA1_c07780at 805.389 kb on - strand, within PGA1_c07780at 805.389 kb on - strand, within PGA1_c07780at 805.392 kb on - strand, within PGA1_c07780at 805.403 kb on + strand, within PGA1_c07780at 805.403 kb on + strand, within PGA1_c07780at 805.403 kb on + strand, within PGA1_c07780at 805.435 kb on - strand, within PGA1_c07780at 805.435 kb on - strand, within PGA1_c07780at 805.449 kb on - strand, within PGA1_c07780at 805.455 kb on + strand, within PGA1_c07780at 805.455 kb on + strand, within PGA1_c07780at 805.456 kb on + strand, within PGA1_c07780at 805.464 kb on - strand, within PGA1_c07780at 805.495 kb on + strand, within PGA1_c07780at 805.495 kb on + strand, within PGA1_c07780at 805.495 kb on + strand, within PGA1_c07780at 805.565 kb on + strand, within PGA1_c07780at 805.570 kb on + strand, within PGA1_c07780at 805.577 kb on + strand, within PGA1_c07780at 805.685 kb on + strand, within PGA1_c07780at 805.726 kb on + strand, within PGA1_c07780at 805.726 kb on + strand, within PGA1_c07780at 805.734 kb on - strand, within PGA1_c07780at 805.762 kb on - strand, within PGA1_c07780at 805.767 kb on + strand, within PGA1_c07780at 805.767 kb on + strand, within PGA1_c07780at 805.812 kb on + strand, within PGA1_c07780at 805.820 kb on - strand, within PGA1_c07780at 805.825 kb on + strand, within PGA1_c07780at 805.835 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.845 kb on + strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.853 kb on - strand, within PGA1_c07780at 805.858 kb on + strand, within PGA1_c07780at 805.903 kb on - strand, within PGA1_c07780at 805.904 kb on - strand, within PGA1_c07780at 805.907 kb on - strand, within PGA1_c07780at 805.950 kb on - strand, within PGA1_c07780

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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803,515 + PGA1_c07760 0.28 +0.8
803,543 + PGA1_c07760 0.30 +2.1
803,550 + PGA1_c07760 0.31 -1.5
803,551 - PGA1_c07760 0.31 +0.9
803,563 + PGA1_c07760 0.32 +0.5
803,587 + PGA1_c07760 0.34 +1.9
803,587 + PGA1_c07760 0.34 +0.6
803,595 - PGA1_c07760 0.34 +2.2
803,603 - PGA1_c07760 0.35 -2.6
803,656 + PGA1_c07760 0.39 -0.7
803,672 - PGA1_c07760 0.40 +0.6
803,683 - PGA1_c07760 0.41 -1.7
803,710 + PGA1_c07760 0.43 -0.0
803,713 - PGA1_c07760 0.43 -1.0
803,755 + PGA1_c07760 0.46 +0.5
803,788 + PGA1_c07760 0.49 +1.9
803,815 + PGA1_c07760 0.51 -0.3
803,815 + PGA1_c07760 0.51 +1.1
803,815 + PGA1_c07760 0.51 -0.5
803,823 - PGA1_c07760 0.51 +1.4
803,841 + PGA1_c07760 0.53 +1.3
803,903 + PGA1_c07760 0.57 -0.7
803,906 - PGA1_c07760 0.58 -1.3
803,947 - PGA1_c07760 0.61 +0.3
804,023 + PGA1_c07760 0.66 +1.0
804,126 + PGA1_c07760 0.74 +0.3
804,139 - PGA1_c07760 0.75 -1.8
804,139 - PGA1_c07760 0.75 +0.9
804,173 + PGA1_c07760 0.78 +0.0
804,181 - PGA1_c07760 0.78 -0.3
804,260 + PGA1_c07760 0.84 +0.6
804,265 + PGA1_c07760 0.85 -0.3
804,267 - PGA1_c07760 0.85 +1.0
804,282 - PGA1_c07760 0.86 +1.3
804,345 - +2.1
804,436 + +0.6
804,442 + +2.6
804,531 - -0.7
804,552 + PGA1_c07770 0.14 +0.7
804,621 - PGA1_c07770 0.27 +2.3
804,659 + PGA1_c07770 0.35 +0.3
804,659 + PGA1_c07770 0.35 -0.3
804,667 - PGA1_c07770 0.36 +0.3
804,667 - PGA1_c07770 0.36 +1.3
804,667 - PGA1_c07770 0.36 -2.0
804,667 - PGA1_c07770 0.36 +3.0
804,711 - PGA1_c07770 0.45 +3.6
804,729 + PGA1_c07770 0.48 -0.5
804,737 - PGA1_c07770 0.50 +0.5
804,754 + PGA1_c07770 0.53 -0.3
804,754 + PGA1_c07770 0.53 +2.1
804,754 + PGA1_c07770 0.53 -0.3
804,754 + PGA1_c07770 0.53 -1.3
804,754 + PGA1_c07770 0.53 -0.2
804,754 + PGA1_c07770 0.53 +3.4
804,762 - PGA1_c07770 0.55 +1.3
804,762 - PGA1_c07770 0.55 +2.9
804,762 - PGA1_c07770 0.55 +0.3
804,762 - PGA1_c07770 0.55 +1.3
804,762 - PGA1_c07770 0.55 +0.7
804,762 - PGA1_c07770 0.55 +2.0
804,762 - PGA1_c07770 0.55 -2.1
804,762 - PGA1_c07770 0.55 +1.3
804,762 - PGA1_c07770 0.55 -0.7
804,762 - PGA1_c07770 0.55 +2.2
804,762 - PGA1_c07770 0.55 +2.9
804,762 - PGA1_c07770 0.55 +1.5
804,762 - PGA1_c07770 0.55 -2.3
804,767 - PGA1_c07770 0.56 -1.0
804,824 - PGA1_c07770 0.67 -0.7
804,859 + PGA1_c07770 0.73 +1.6
804,859 + PGA1_c07770 0.73 -1.0
804,881 + PGA1_c07770 0.78 +0.8
804,918 + PGA1_c07770 0.85 +0.1
804,941 + PGA1_c07770 0.89 +2.6
804,941 + PGA1_c07770 0.89 +0.3
804,950 - -0.5
805,007 + +1.8
805,031 + +2.4
805,039 - +1.6
805,070 - -1.5
805,108 + +3.3
805,137 - -1.8
805,137 - -0.7
805,145 + -3.1
805,196 + -1.3
805,196 + -2.3
805,204 - +2.0
805,237 - PGA1_c07780 0.11 +1.7
805,283 + PGA1_c07780 0.15 +1.7
805,286 - PGA1_c07780 0.15 +2.6
805,289 + PGA1_c07780 0.16 +1.5
805,289 + PGA1_c07780 0.16 -0.3
805,297 - PGA1_c07780 0.16 +0.3
805,315 + PGA1_c07780 0.18 +0.3
805,342 + PGA1_c07780 0.20 -0.7
805,381 + PGA1_c07780 0.24 +0.0
805,381 + PGA1_c07780 0.24 +0.9
805,381 + PGA1_c07780 0.24 -1.7
805,381 + PGA1_c07780 0.24 -2.3
805,389 - PGA1_c07780 0.24 +2.1
805,389 - PGA1_c07780 0.24 -2.8
805,389 - PGA1_c07780 0.24 +1.3
805,392 - PGA1_c07780 0.25 -0.9
805,403 + PGA1_c07780 0.25 +1.7
805,403 + PGA1_c07780 0.25 +1.3
805,403 + PGA1_c07780 0.25 -1.5
805,435 - PGA1_c07780 0.28 +2.2
805,435 - PGA1_c07780 0.28 +1.3
805,449 - PGA1_c07780 0.29 -0.7
805,455 + PGA1_c07780 0.30 -1.8
805,455 + PGA1_c07780 0.30 -0.5
805,456 + PGA1_c07780 0.30 +1.1
805,464 - PGA1_c07780 0.31 -0.7
805,495 + PGA1_c07780 0.34 +2.4
805,495 + PGA1_c07780 0.34 +0.7
805,495 + PGA1_c07780 0.34 +0.7
805,565 + PGA1_c07780 0.40 +1.1
805,570 + PGA1_c07780 0.40 -0.7
805,577 + PGA1_c07780 0.41 -2.1
805,685 + PGA1_c07780 0.50 +2.7
805,726 + PGA1_c07780 0.54 +1.7
805,726 + PGA1_c07780 0.54 -2.5
805,734 - PGA1_c07780 0.54 -1.5
805,762 - PGA1_c07780 0.57 +0.3
805,767 + PGA1_c07780 0.57 -1.5
805,767 + PGA1_c07780 0.57 -2.6
805,812 + PGA1_c07780 0.61 +1.4
805,820 - PGA1_c07780 0.62 +1.4
805,825 + PGA1_c07780 0.62 +1.3
805,835 + PGA1_c07780 0.63 +1.0
805,845 + PGA1_c07780 0.64 +0.4
805,845 + PGA1_c07780 0.64 -2.5
805,845 + PGA1_c07780 0.64 +1.6
805,845 + PGA1_c07780 0.64 +0.3
805,845 + PGA1_c07780 0.64 -1.1
805,845 + PGA1_c07780 0.64 -1.8
805,845 + PGA1_c07780 0.64 +0.0
805,853 - PGA1_c07780 0.65 -1.5
805,853 - PGA1_c07780 0.65 +1.2
805,853 - PGA1_c07780 0.65 -1.7
805,853 - PGA1_c07780 0.65 +1.2
805,858 + PGA1_c07780 0.65 +0.2
805,903 - PGA1_c07780 0.69 +0.2
805,904 - PGA1_c07780 0.69 +1.6
805,907 - PGA1_c07780 0.69 -2.3
805,950 - PGA1_c07780 0.73 +1.5

Or see this region's nucleotide sequence