Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00770

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00750 and PGA1_c00760 are separated by 36 nucleotidesPGA1_c00760 and PGA1_c00770 are separated by 158 nucleotidesPGA1_c00770 and PGA1_c00780 are separated by 123 nucleotides PGA1_c00750: PGA1_c00750 - UDP-N-acetylglucosamine acyltransferase-like protein, at 72,913 to 73,662 _c00750 PGA1_c00760: PGA1_c00760 - putative pyruvate dehydrogenase complex repressor, at 73,699 to 74,469 _c00760 PGA1_c00770: PGA1_c00770 - hypothetical protein, at 74,628 to 74,966 _c00770 PGA1_c00780: PGA1_c00780 - putative chromosome segregation protein SMC, at 75,090 to 78,545 _c00780 Position (kb) 74 75Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 73.658 kb on - strandat 73.674 kb on - strandat 73.703 kb on - strandat 73.710 kb on - strandat 73.712 kb on + strandat 73.740 kb on + strandat 73.782 kb on + strand, within PGA1_c00760at 73.782 kb on + strand, within PGA1_c00760at 73.790 kb on - strand, within PGA1_c00760at 73.790 kb on - strand, within PGA1_c00760at 73.800 kb on - strand, within PGA1_c00760at 73.800 kb on - strand, within PGA1_c00760at 73.801 kb on + strand, within PGA1_c00760at 73.864 kb on + strand, within PGA1_c00760at 73.864 kb on + strand, within PGA1_c00760at 73.864 kb on + strand, within PGA1_c00760at 73.939 kb on - strand, within PGA1_c00760at 74.037 kb on + strand, within PGA1_c00760at 74.045 kb on - strand, within PGA1_c00760at 74.045 kb on - strand, within PGA1_c00760at 74.045 kb on - strand, within PGA1_c00760at 74.064 kb on + strand, within PGA1_c00760at 74.064 kb on + strand, within PGA1_c00760at 74.231 kb on + strand, within PGA1_c00760at 74.246 kb on - strand, within PGA1_c00760at 74.346 kb on + strand, within PGA1_c00760at 74.363 kb on + strand, within PGA1_c00760at 74.364 kb on - strand, within PGA1_c00760at 74.381 kb on + strand, within PGA1_c00760at 74.381 kb on + strand, within PGA1_c00760at 74.381 kb on + strand, within PGA1_c00760at 74.389 kb on - strand, within PGA1_c00760at 74.400 kb on + strandat 74.424 kb on + strandat 74.424 kb on + strandat 74.432 kb on - strandat 74.432 kb on - strandat 74.437 kb on + strandat 74.448 kb on + strandat 74.473 kb on - strandat 74.473 kb on - strandat 74.504 kb on - strandat 74.525 kb on - strandat 74.525 kb on - strandat 74.535 kb on + strandat 74.536 kb on - strandat 74.536 kb on - strandat 74.536 kb on - strandat 74.573 kb on + strandat 74.586 kb on - strandat 74.619 kb on + strandat 74.619 kb on + strandat 74.619 kb on + strandat 74.622 kb on + strandat 74.622 kb on - strandat 74.627 kb on - strandat 74.628 kb on - strandat 74.628 kb on - strandat 74.628 kb on - strandat 74.629 kb on + strandat 74.647 kb on - strandat 74.660 kb on - strandat 74.696 kb on - strand, within PGA1_c00770at 74.710 kb on + strand, within PGA1_c00770at 74.754 kb on + strand, within PGA1_c00770at 74.754 kb on - strand, within PGA1_c00770at 74.762 kb on - strand, within PGA1_c00770at 74.764 kb on - strand, within PGA1_c00770at 74.775 kb on - strand, within PGA1_c00770at 74.801 kb on + strand, within PGA1_c00770at 74.834 kb on + strand, within PGA1_c00770at 74.892 kb on - strand, within PGA1_c00770at 74.892 kb on - strand, within PGA1_c00770at 74.901 kb on + strand, within PGA1_c00770at 74.901 kb on + strand, within PGA1_c00770at 74.909 kb on - strand, within PGA1_c00770at 74.909 kb on - strand, within PGA1_c00770at 74.948 kb on + strandat 75.001 kb on - strandat 75.012 kb on + strandat 75.200 kb on + strandat 75.224 kb on - strandat 75.307 kb on - strandat 75.333 kb on - strandat 75.404 kb on - strandat 75.445 kb on + strand, within PGA1_c00780at 75.445 kb on + strand, within PGA1_c00780at 75.513 kb on + strand, within PGA1_c00780at 75.822 kb on - strand, within PGA1_c00780at 75.829 kb on - strand, within PGA1_c00780at 75.847 kb on - strand, within PGA1_c00780at 75.878 kb on - strand, within PGA1_c00780

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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73,658 - -1.3
73,674 - +1.3
73,703 - +0.7
73,710 - +1.3
73,712 + +0.0
73,740 + -1.8
73,782 + PGA1_c00760 0.11 +1.8
73,782 + PGA1_c00760 0.11 +0.9
73,790 - PGA1_c00760 0.12 -1.0
73,790 - PGA1_c00760 0.12 +1.6
73,800 - PGA1_c00760 0.13 +0.4
73,800 - PGA1_c00760 0.13 +1.2
73,801 + PGA1_c00760 0.13 -0.2
73,864 + PGA1_c00760 0.21 +3.4
73,864 + PGA1_c00760 0.21 -2.0
73,864 + PGA1_c00760 0.21 +0.7
73,939 - PGA1_c00760 0.31 -2.6
74,037 + PGA1_c00760 0.44 +0.8
74,045 - PGA1_c00760 0.45 +0.7
74,045 - PGA1_c00760 0.45 +0.6
74,045 - PGA1_c00760 0.45 -0.5
74,064 + PGA1_c00760 0.47 -0.8
74,064 + PGA1_c00760 0.47 -3.2
74,231 + PGA1_c00760 0.69 -0.6
74,246 - PGA1_c00760 0.71 -2.6
74,346 + PGA1_c00760 0.84 -1.9
74,363 + PGA1_c00760 0.86 -1.0
74,364 - PGA1_c00760 0.86 +0.1
74,381 + PGA1_c00760 0.88 -0.8
74,381 + PGA1_c00760 0.88 +0.3
74,381 + PGA1_c00760 0.88 +0.8
74,389 - PGA1_c00760 0.89 -0.2
74,400 + +0.2
74,424 + -1.9
74,424 + -0.8
74,432 - -2.4
74,432 - -1.9
74,437 + -0.0
74,448 + -1.9
74,473 - -1.8
74,473 - +2.6
74,504 - +0.4
74,525 - +0.3
74,525 - -2.8
74,535 + -0.9
74,536 - +0.6
74,536 - +1.6
74,536 - +1.9
74,573 + +1.6
74,586 - -0.0
74,619 + +2.2
74,619 + -1.2
74,619 + -0.4
74,622 + -1.4
74,622 - +0.9
74,627 - +1.7
74,628 - +1.0
74,628 - +1.0
74,628 - -0.7
74,629 + +0.1
74,647 - -0.2
74,660 - -0.1
74,696 - PGA1_c00770 0.20 -1.2
74,710 + PGA1_c00770 0.24 +0.7
74,754 + PGA1_c00770 0.37 -1.1
74,754 - PGA1_c00770 0.37 -2.7
74,762 - PGA1_c00770 0.40 +0.9
74,764 - PGA1_c00770 0.40 -0.9
74,775 - PGA1_c00770 0.43 +0.0
74,801 + PGA1_c00770 0.51 -0.9
74,834 + PGA1_c00770 0.61 +0.1
74,892 - PGA1_c00770 0.78 -1.8
74,892 - PGA1_c00770 0.78 -0.5
74,901 + PGA1_c00770 0.81 -0.4
74,901 + PGA1_c00770 0.81 -2.0
74,909 - PGA1_c00770 0.83 -1.0
74,909 - PGA1_c00770 0.83 -0.8
74,948 + +1.1
75,001 - -2.3
75,012 + +0.7
75,200 + +1.4
75,224 - -4.0
75,307 - +0.2
75,333 - +2.6
75,404 - -0.1
75,445 + PGA1_c00780 0.10 +0.3
75,445 + PGA1_c00780 0.10 -0.2
75,513 + PGA1_c00780 0.12 -1.3
75,822 - PGA1_c00780 0.21 -0.2
75,829 - PGA1_c00780 0.21 -2.9
75,847 - PGA1_c00780 0.22 -0.1
75,878 - PGA1_c00780 0.23 -0.1

Or see this region's nucleotide sequence