Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_658 and HP15_659 overlap by 4 nucleotides HP15_659 and HP15_660 are separated by 1 nucleotides HP15_660 and HP15_661 are separated by 325 nucleotides
HP15_658: HP15_658 - secreted protein-putative xanthan lyase, at 679,216 to 681,789
_658
HP15_659: HP15_659 - hypothetical protein, at 681,786 to 682,568
_659
HP15_660: HP15_660 - hypothetical protein, at 682,570 to 682,953
_660
HP15_661: HP15_661 - hypothetical protein, at 683,279 to 684,058
_661
Position (kb) 682
683 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 681.574 kb on + strand at 681.605 kb on + strand at 681.646 kb on + strand at 681.646 kb on + strand at 681.705 kb on - strand at 681.736 kb on + strand at 681.771 kb on - strand at 681.771 kb on - strand at 681.962 kb on + strand, within HP15_659 at 681.977 kb on + strand, within HP15_659 at 682.165 kb on + strand, within HP15_659 at 682.175 kb on + strand, within HP15_659 at 682.324 kb on - strand, within HP15_659 at 682.325 kb on - strand, within HP15_659 at 682.338 kb on + strand, within HP15_659 at 682.359 kb on - strand, within HP15_659 at 682.417 kb on + strand, within HP15_659 at 682.514 kb on + strand at 682.554 kb on + strand at 682.573 kb on + strand at 682.573 kb on + strand at 682.581 kb on - strand at 682.581 kb on - strand at 682.639 kb on + strand, within HP15_660 at 682.640 kb on + strand, within HP15_660 at 682.644 kb on + strand, within HP15_660 at 682.831 kb on + strand, within HP15_660 at 682.834 kb on - strand, within HP15_660 at 682.875 kb on + strand, within HP15_660 at 682.910 kb on + strand, within HP15_660 at 683.149 kb on + strand at 683.155 kb on + strand at 683.228 kb on + strand at 683.285 kb on - strand at 683.285 kb on - strand at 683.321 kb on + strand at 683.345 kb on - strand at 683.371 kb on + strand, within HP15_661 at 683.438 kb on + strand, within HP15_661 at 683.456 kb on - strand, within HP15_661 at 683.647 kb on + strand, within HP15_661 at 683.728 kb on - strand, within HP15_661 at 683.769 kb on - strand, within HP15_661 at 683.840 kb on - strand, within HP15_661 at 683.845 kb on - strand, within HP15_661 at 683.903 kb on + strand, within HP15_661 at 683.908 kb on + strand, within HP15_661 at 683.911 kb on - strand, within HP15_661 at 683.950 kb on + strand, within HP15_661
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 681,574 + -0.9 681,605 + +1.3 681,646 + -0.0 681,646 + +2.5 681,705 - +1.6 681,736 + +0.8 681,771 - +0.5 681,771 - +2.2 681,962 + HP15_659 0.22 -1.5 681,977 + HP15_659 0.24 -2.3 682,165 + HP15_659 0.48 -0.1 682,175 + HP15_659 0.50 +0.0 682,324 - HP15_659 0.69 +0.1 682,325 - HP15_659 0.69 -1.9 682,338 + HP15_659 0.70 +0.1 682,359 - HP15_659 0.73 +1.5 682,417 + HP15_659 0.81 -0.2 682,514 + +0.5 682,554 + -0.4 682,573 + -2.1 682,573 + -1.0 682,581 - +0.1 682,581 - +0.4 682,639 + HP15_660 0.18 +0.1 682,640 + HP15_660 0.18 -1.5 682,644 + HP15_660 0.19 -3.3 682,831 + HP15_660 0.68 -1.9 682,834 - HP15_660 0.69 -0.9 682,875 + HP15_660 0.79 -0.5 682,910 + HP15_660 0.89 -2.3 683,149 + -4.2 683,155 + +0.4 683,228 + +2.9 683,285 - +0.2 683,285 - +0.7 683,321 + +0.0 683,345 - +2.4 683,371 + HP15_661 0.12 -0.1 683,438 + HP15_661 0.20 -1.9 683,456 - HP15_661 0.23 -2.7 683,647 + HP15_661 0.47 -0.1 683,728 - HP15_661 0.58 -1.9 683,769 - HP15_661 0.63 -0.0 683,840 - HP15_661 0.72 +0.1 683,845 - HP15_661 0.73 +2.5 683,903 + HP15_661 0.80 -0.7 683,908 + HP15_661 0.81 +0.5 683,911 - HP15_661 0.81 +0.2 683,950 + HP15_661 0.86 -2.3
Or see this region's nucleotide sequence