Strain Fitness in Marinobacter adhaerens HP15 around HP15_658

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_657 and HP15_658 overlap by 4 nucleotidesHP15_658 and HP15_659 overlap by 4 nucleotidesHP15_659 and HP15_660 are separated by 1 nucleotides HP15_657: HP15_657 - phage tail fiber protein, at 677,783 to 679,219 _657 HP15_658: HP15_658 - secreted protein-putative xanthan lyase, at 679,216 to 681,789 _658 HP15_659: HP15_659 - hypothetical protein, at 681,786 to 682,568 _659 HP15_660: HP15_660 - hypothetical protein, at 682,570 to 682,953 _660 Position (kb) 679 680 681 682Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 678.273 kb on - strand, within HP15_657at 678.319 kb on - strand, within HP15_657at 678.333 kb on - strand, within HP15_657at 678.409 kb on + strand, within HP15_657at 678.409 kb on - strand, within HP15_657at 678.466 kb on + strand, within HP15_657at 678.479 kb on - strand, within HP15_657at 678.500 kb on + strand, within HP15_657at 678.505 kb on + strand, within HP15_657at 678.515 kb on + strand, within HP15_657at 678.560 kb on - strand, within HP15_657at 678.624 kb on + strand, within HP15_657at 678.624 kb on + strand, within HP15_657at 678.664 kb on + strand, within HP15_657at 678.664 kb on + strand, within HP15_657at 678.779 kb on - strand, within HP15_657at 678.826 kb on + strand, within HP15_657at 678.853 kb on + strand, within HP15_657at 678.900 kb on - strand, within HP15_657at 678.964 kb on + strand, within HP15_657at 678.995 kb on - strand, within HP15_657at 679.085 kb on + strandat 679.107 kb on - strandat 679.233 kb on + strandat 679.244 kb on + strandat 679.312 kb on + strandat 679.463 kb on + strandat 679.619 kb on - strand, within HP15_658at 679.798 kb on - strand, within HP15_658at 679.825 kb on + strand, within HP15_658at 679.833 kb on - strand, within HP15_658at 679.833 kb on - strand, within HP15_658at 679.833 kb on - strand, within HP15_658at 679.925 kb on + strand, within HP15_658at 679.942 kb on + strand, within HP15_658at 679.942 kb on + strand, within HP15_658at 679.950 kb on - strand, within HP15_658at 679.950 kb on - strand, within HP15_658at 679.965 kb on - strand, within HP15_658at 680.160 kb on - strand, within HP15_658at 680.160 kb on - strand, within HP15_658at 680.166 kb on - strand, within HP15_658at 680.199 kb on + strand, within HP15_658at 680.199 kb on + strand, within HP15_658at 680.199 kb on + strand, within HP15_658at 680.207 kb on - strand, within HP15_658at 680.257 kb on + strand, within HP15_658at 680.265 kb on + strand, within HP15_658at 680.273 kb on - strand, within HP15_658at 680.273 kb on - strand, within HP15_658at 680.609 kb on + strand, within HP15_658at 680.625 kb on - strand, within HP15_658at 680.632 kb on - strand, within HP15_658at 680.668 kb on - strand, within HP15_658at 680.681 kb on + strand, within HP15_658at 680.705 kb on + strand, within HP15_658at 680.717 kb on + strand, within HP15_658at 680.720 kb on + strand, within HP15_658at 680.739 kb on - strand, within HP15_658at 680.742 kb on + strand, within HP15_658at 680.742 kb on + strand, within HP15_658at 680.742 kb on + strand, within HP15_658at 680.743 kb on + strand, within HP15_658at 680.748 kb on - strand, within HP15_658at 680.750 kb on - strand, within HP15_658at 680.873 kb on - strand, within HP15_658at 680.947 kb on - strand, within HP15_658at 681.011 kb on - strand, within HP15_658at 681.025 kb on - strand, within HP15_658at 681.081 kb on + strand, within HP15_658at 681.160 kb on + strand, within HP15_658at 681.168 kb on - strand, within HP15_658at 681.217 kb on + strand, within HP15_658at 681.217 kb on + strand, within HP15_658at 681.225 kb on - strand, within HP15_658at 681.256 kb on + strand, within HP15_658at 681.304 kb on + strand, within HP15_658at 681.304 kb on + strand, within HP15_658at 681.312 kb on - strand, within HP15_658at 681.312 kb on - strand, within HP15_658at 681.321 kb on + strand, within HP15_658at 681.321 kb on + strand, within HP15_658at 681.321 kb on + strand, within HP15_658at 681.365 kb on + strand, within HP15_658at 681.381 kb on - strand, within HP15_658at 681.396 kb on - strand, within HP15_658at 681.414 kb on - strand, within HP15_658at 681.511 kb on - strand, within HP15_658at 681.513 kb on + strand, within HP15_658at 681.513 kb on + strand, within HP15_658at 681.513 kb on + strand, within HP15_658at 681.513 kb on + strand, within HP15_658at 681.521 kb on - strand, within HP15_658at 681.521 kb on - strand, within HP15_658at 681.521 kb on - strand, within HP15_658at 681.574 kb on + strandat 681.605 kb on + strandat 681.646 kb on + strandat 681.646 kb on + strandat 681.705 kb on - strandat 681.736 kb on + strandat 681.771 kb on - strandat 681.771 kb on - strandat 681.962 kb on + strand, within HP15_659at 681.977 kb on + strand, within HP15_659at 682.165 kb on + strand, within HP15_659at 682.175 kb on + strand, within HP15_659at 682.324 kb on - strand, within HP15_659at 682.325 kb on - strand, within HP15_659at 682.338 kb on + strand, within HP15_659at 682.359 kb on - strand, within HP15_659at 682.417 kb on + strand, within HP15_659at 682.514 kb on + strandat 682.554 kb on + strandat 682.573 kb on + strandat 682.573 kb on + strandat 682.581 kb on - strandat 682.581 kb on - strandat 682.639 kb on + strand, within HP15_660at 682.640 kb on + strand, within HP15_660at 682.644 kb on + strand, within HP15_660

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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678,273 - HP15_657 0.34 +0.1
678,319 - HP15_657 0.37 +1.6
678,333 - HP15_657 0.38 +0.6
678,409 + HP15_657 0.44 +0.2
678,409 - HP15_657 0.44 -0.5
678,466 + HP15_657 0.48 +0.0
678,479 - HP15_657 0.48 +0.6
678,500 + HP15_657 0.50 +0.8
678,505 + HP15_657 0.50 -3.1
678,515 + HP15_657 0.51 +2.4
678,560 - HP15_657 0.54 -1.5
678,624 + HP15_657 0.59 +1.8
678,624 + HP15_657 0.59 +1.5
678,664 + HP15_657 0.61 +2.6
678,664 + HP15_657 0.61 -0.1
678,779 - HP15_657 0.69 +1.3
678,826 + HP15_657 0.73 +1.1
678,853 + HP15_657 0.74 +1.6
678,900 - HP15_657 0.78 +0.4
678,964 + HP15_657 0.82 +1.7
678,995 - HP15_657 0.84 +0.7
679,085 + +0.9
679,107 - +2.1
679,233 + +1.3
679,244 + +1.2
679,312 + +0.2
679,463 + +1.4
679,619 - HP15_658 0.16 -1.1
679,798 - HP15_658 0.23 +0.4
679,825 + HP15_658 0.24 +1.8
679,833 - HP15_658 0.24 +2.6
679,833 - HP15_658 0.24 -0.9
679,833 - HP15_658 0.24 -1.7
679,925 + HP15_658 0.28 +1.1
679,942 + HP15_658 0.28 +2.4
679,942 + HP15_658 0.28 +1.3
679,950 - HP15_658 0.29 +2.0
679,950 - HP15_658 0.29 +2.1
679,965 - HP15_658 0.29 +0.0
680,160 - HP15_658 0.37 +1.1
680,160 - HP15_658 0.37 +0.8
680,166 - HP15_658 0.37 +1.4
680,199 + HP15_658 0.38 -0.9
680,199 + HP15_658 0.38 +1.0
680,199 + HP15_658 0.38 +0.5
680,207 - HP15_658 0.39 +0.8
680,257 + HP15_658 0.40 +0.5
680,265 + HP15_658 0.41 +1.5
680,273 - HP15_658 0.41 +0.1
680,273 - HP15_658 0.41 +2.4
680,609 + HP15_658 0.54 +1.1
680,625 - HP15_658 0.55 +0.1
680,632 - HP15_658 0.55 +0.3
680,668 - HP15_658 0.56 +0.5
680,681 + HP15_658 0.57 +1.1
680,705 + HP15_658 0.58 +1.6
680,717 + HP15_658 0.58 +3.8
680,720 + HP15_658 0.58 +1.7
680,739 - HP15_658 0.59 +2.0
680,742 + HP15_658 0.59 +0.2
680,742 + HP15_658 0.59 -1.5
680,742 + HP15_658 0.59 +2.1
680,743 + HP15_658 0.59 +1.8
680,748 - HP15_658 0.60 +1.4
680,750 - HP15_658 0.60 +1.1
680,873 - HP15_658 0.64 +0.1
680,947 - HP15_658 0.67 +0.8
681,011 - HP15_658 0.70 -3.1
681,025 - HP15_658 0.70 +1.8
681,081 + HP15_658 0.72 +0.6
681,160 + HP15_658 0.76 +0.7
681,168 - HP15_658 0.76 +1.8
681,217 + HP15_658 0.78 -1.2
681,217 + HP15_658 0.78 +0.1
681,225 - HP15_658 0.78 +0.9
681,256 + HP15_658 0.79 +0.0
681,304 + HP15_658 0.81 +0.5
681,304 + HP15_658 0.81 +0.8
681,312 - HP15_658 0.81 +1.6
681,312 - HP15_658 0.81 -0.9
681,321 + HP15_658 0.82 +1.5
681,321 + HP15_658 0.82 +0.5
681,321 + HP15_658 0.82 +2.4
681,365 + HP15_658 0.83 +0.1
681,381 - HP15_658 0.84 +0.1
681,396 - HP15_658 0.85 +2.4
681,414 - HP15_658 0.85 +2.4
681,511 - HP15_658 0.89 +0.8
681,513 + HP15_658 0.89 +2.0
681,513 + HP15_658 0.89 +0.0
681,513 + HP15_658 0.89 +2.6
681,513 + HP15_658 0.89 +1.1
681,521 - HP15_658 0.90 +0.9
681,521 - HP15_658 0.90 +1.7
681,521 - HP15_658 0.90 +2.8
681,574 + -0.9
681,605 + +1.3
681,646 + -0.0
681,646 + +2.5
681,705 - +1.6
681,736 + +0.8
681,771 - +0.5
681,771 - +2.2
681,962 + HP15_659 0.22 -1.5
681,977 + HP15_659 0.24 -2.3
682,165 + HP15_659 0.48 -0.1
682,175 + HP15_659 0.50 +0.0
682,324 - HP15_659 0.69 +0.1
682,325 - HP15_659 0.69 -1.9
682,338 + HP15_659 0.70 +0.1
682,359 - HP15_659 0.73 +1.5
682,417 + HP15_659 0.81 -0.2
682,514 + +0.5
682,554 + -0.4
682,573 + -2.1
682,573 + -1.0
682,581 - +0.1
682,581 - +0.4
682,639 + HP15_660 0.18 +0.1
682,640 + HP15_660 0.18 -1.5
682,644 + HP15_660 0.19 -3.3

Or see this region's nucleotide sequence