Strain Fitness in Marinobacter adhaerens HP15 around HP15_631

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_630 and HP15_631 are separated by 17 nucleotidesHP15_631 and HP15_632 are separated by 50 nucleotidesHP15_632 and HP15_633 are separated by 24 nucleotides HP15_630: HP15_630 - alanine racemase, at 653,273 to 654,349 _630 HP15_631: HP15_631 - conserved hypothetical protein, at 654,367 to 654,723 _631 HP15_632: HP15_632 - hypothetical protein, at 654,774 to 654,893 _632 HP15_633: HP15_633 - dTDP-4-dehydrorhamnose reductase-like protein, at 654,918 to 655,751 _633 Position (kb) 654 655Strain fitness (log2 ratio) -2 -1 0 1at 654.375 kb on + strandat 654.607 kb on + strand, within HP15_631at 654.663 kb on + strand, within HP15_631at 654.706 kb on + strandat 654.929 kb on + strandat 655.046 kb on + strand, within HP15_633at 655.344 kb on + strand, within HP15_633at 655.344 kb on + strand, within HP15_633at 655.610 kb on + strand, within HP15_633

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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654,375 + +0.3
654,607 + HP15_631 0.67 +0.1
654,663 + HP15_631 0.83 -0.6
654,706 + +0.4
654,929 + -0.9
655,046 + HP15_633 0.15 +0.3
655,344 + HP15_633 0.51 -0.3
655,344 + HP15_633 0.51 -2.1
655,610 + HP15_633 0.83 -1.2

Or see this region's nucleotide sequence