Strain Fitness in Marinobacter adhaerens HP15 around HP15_60

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_58 and HP15_59 are separated by 91 nucleotidesHP15_59 and HP15_60 are separated by 13 nucleotidesHP15_60 and HP15_61 are separated by 22 nucleotides HP15_58: HP15_58 - GTP cyclohydrolase 1, at 63,439 to 64,068 _58 HP15_59: HP15_59 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 64,160 to 64,906 _59 HP15_60: HP15_60 - transcription regulator, AsnC-type, at 64,920 to 65,507 _60 HP15_61: HP15_61 - chain A, alpha-keto acid dehydrogenase-like protein, at 65,530 to 66,759 _61 Position (kb) 64 65 66Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 63.933 kb on + strand, within HP15_58at 63.936 kb on - strand, within HP15_58at 63.985 kb on + strand, within HP15_58at 63.992 kb on + strand, within HP15_58at 63.993 kb on - strand, within HP15_58at 63.997 kb on + strand, within HP15_58at 64.000 kb on - strand, within HP15_58at 64.000 kb on - strand, within HP15_58at 64.005 kb on - strand, within HP15_58at 64.031 kb on - strandat 64.063 kb on + strandat 64.066 kb on - strandat 64.066 kb on - strandat 64.067 kb on + strandat 64.071 kb on - strandat 64.139 kb on + strandat 64.141 kb on + strandat 64.141 kb on + strandat 64.142 kb on - strandat 64.149 kb on - strandat 64.196 kb on + strandat 64.229 kb on - strandat 64.229 kb on - strandat 64.274 kb on + strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.307 kb on + strand, within HP15_59at 64.310 kb on - strand, within HP15_59at 64.351 kb on - strand, within HP15_59at 64.426 kb on + strand, within HP15_59at 64.463 kb on - strand, within HP15_59at 64.517 kb on + strand, within HP15_59at 64.525 kb on - strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.564 kb on - strand, within HP15_59at 64.584 kb on - strand, within HP15_59at 64.623 kb on - strand, within HP15_59at 64.627 kb on - strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.795 kb on + strand, within HP15_59at 64.803 kb on - strand, within HP15_59at 64.839 kb on - strandat 64.847 kb on - strandat 64.849 kb on + strandat 64.880 kb on + strandat 64.900 kb on + strandat 64.908 kb on - strandat 64.908 kb on - strandat 64.908 kb on - strandat 64.986 kb on - strand, within HP15_60at 65.030 kb on + strand, within HP15_60at 65.036 kb on - strand, within HP15_60at 65.088 kb on + strand, within HP15_60at 65.118 kb on - strand, within HP15_60at 65.278 kb on + strand, within HP15_60at 65.286 kb on - strand, within HP15_60at 65.288 kb on + strand, within HP15_60at 65.320 kb on + strand, within HP15_60at 65.320 kb on + strand, within HP15_60at 65.329 kb on - strand, within HP15_60at 65.329 kb on - strand, within HP15_60at 65.339 kb on - strand, within HP15_60at 65.561 kb on + strandat 65.647 kb on - strandat 65.687 kb on - strand, within HP15_61at 65.760 kb on + strand, within HP15_61at 65.767 kb on + strand, within HP15_61at 65.876 kb on - strand, within HP15_61at 65.896 kb on - strand, within HP15_61at 65.898 kb on + strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.942 kb on + strand, within HP15_61at 65.950 kb on - strand, within HP15_61at 65.950 kb on - strand, within HP15_61at 65.954 kb on + strand, within HP15_61at 66.025 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.105 kb on + strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.113 kb on - strand, within HP15_61at 66.161 kb on - strand, within HP15_61at 66.192 kb on - strand, within HP15_61at 66.199 kb on + strand, within HP15_61at 66.224 kb on - strand, within HP15_61at 66.225 kb on - strand, within HP15_61at 66.230 kb on + strand, within HP15_61at 66.283 kb on - strand, within HP15_61at 66.447 kb on + strand, within HP15_61at 66.472 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.489 kb on + strand, within HP15_61at 66.497 kb on - strand, within HP15_61at 66.497 kb on - strand, within HP15_61

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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63,933 + HP15_58 0.78 +3.0
63,936 - HP15_58 0.79 -0.5
63,985 + HP15_58 0.87 +0.0
63,992 + HP15_58 0.88 +0.1
63,993 - HP15_58 0.88 +1.9
63,997 + HP15_58 0.89 +0.1
64,000 - HP15_58 0.89 -2.6
64,000 - HP15_58 0.89 -0.8
64,005 - HP15_58 0.90 +0.8
64,031 - +0.7
64,063 + +0.5
64,066 - -1.0
64,066 - -0.4
64,067 + +0.9
64,071 - -0.8
64,139 + -1.9
64,141 + +0.3
64,141 + +0.2
64,142 - -2.6
64,149 - +0.8
64,196 + +0.1
64,229 - +1.0
64,229 - +0.6
64,274 + HP15_59 0.15 +0.3
64,282 - HP15_59 0.16 -1.1
64,282 - HP15_59 0.16 -0.2
64,282 - HP15_59 0.16 -3.2
64,307 + HP15_59 0.20 +1.0
64,310 - HP15_59 0.20 +0.6
64,351 - HP15_59 0.26 -0.2
64,426 + HP15_59 0.36 +0.0
64,463 - HP15_59 0.41 +0.2
64,517 + HP15_59 0.48 +1.0
64,525 - HP15_59 0.49 -0.2
64,548 + HP15_59 0.52 +0.2
64,548 + HP15_59 0.52 -2.4
64,548 + HP15_59 0.52 +1.0
64,548 + HP15_59 0.52 -1.7
64,564 - HP15_59 0.54 +1.8
64,584 - HP15_59 0.57 -2.6
64,623 - HP15_59 0.62 +0.2
64,627 - HP15_59 0.63 +0.1
64,692 + HP15_59 0.71 -2.6
64,692 + HP15_59 0.71 -1.8
64,692 + HP15_59 0.71 +0.7
64,700 - HP15_59 0.72 -0.4
64,700 - HP15_59 0.72 +3.6
64,700 - HP15_59 0.72 +0.2
64,700 - HP15_59 0.72 +0.7
64,700 - HP15_59 0.72 -0.3
64,795 + HP15_59 0.85 -0.1
64,803 - HP15_59 0.86 +0.4
64,839 - -0.4
64,847 - -0.4
64,849 + +1.2
64,880 + -1.0
64,900 + -1.4
64,908 - +0.9
64,908 - -0.6
64,908 - -0.3
64,986 - HP15_60 0.11 -0.4
65,030 + HP15_60 0.19 +1.5
65,036 - HP15_60 0.20 +1.4
65,088 + HP15_60 0.29 +2.0
65,118 - HP15_60 0.34 +0.8
65,278 + HP15_60 0.61 +1.1
65,286 - HP15_60 0.62 -0.9
65,288 + HP15_60 0.63 -0.4
65,320 + HP15_60 0.68 +0.2
65,320 + HP15_60 0.68 -0.0
65,329 - HP15_60 0.70 +0.4
65,329 - HP15_60 0.70 -2.6
65,339 - HP15_60 0.71 -0.9
65,561 + -0.3
65,647 - -0.3
65,687 - HP15_61 0.13 +0.6
65,760 + HP15_61 0.19 -0.9
65,767 + HP15_61 0.19 -2.8
65,876 - HP15_61 0.28 +0.4
65,896 - HP15_61 0.30 +0.2
65,898 + HP15_61 0.30 +0.0
65,906 - HP15_61 0.31 +0.1
65,906 - HP15_61 0.31 -0.5
65,906 - HP15_61 0.31 -0.5
65,942 + HP15_61 0.33 +0.2
65,950 - HP15_61 0.34 +1.3
65,950 - HP15_61 0.34 +1.8
65,954 + HP15_61 0.34 -1.3
66,025 + HP15_61 0.40 -1.2
66,105 + HP15_61 0.47 -1.0
66,105 + HP15_61 0.47 -4.0
66,105 + HP15_61 0.47 -0.4
66,105 + HP15_61 0.47 -1.6
66,105 + HP15_61 0.47 -1.4
66,113 - HP15_61 0.47 -0.4
66,113 - HP15_61 0.47 +0.7
66,113 - HP15_61 0.47 +0.1
66,113 - HP15_61 0.47 +1.7
66,113 - HP15_61 0.47 +0.6
66,161 - HP15_61 0.51 -0.4
66,192 - HP15_61 0.54 +0.3
66,199 + HP15_61 0.54 -0.3
66,224 - HP15_61 0.56 -0.8
66,225 - HP15_61 0.57 -1.4
66,230 + HP15_61 0.57 +0.8
66,283 - HP15_61 0.61 -0.8
66,447 + HP15_61 0.75 +0.2
66,472 + HP15_61 0.77 -0.1
66,489 + HP15_61 0.78 -1.0
66,489 + HP15_61 0.78 +0.4
66,489 + HP15_61 0.78 -0.4
66,497 - HP15_61 0.79 +0.2
66,497 - HP15_61 0.79 +0.3

Or see this region's nucleotide sequence