Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_rRNA5 and HP15_rRNA6 are separated by 101 nucleotides HP15_rRNA6 and HP15_538 are separated by 128 nucleotides HP15_538 and HP15_539 are separated by 90 nucleotides HP15_539 and HP15_540 overlap by 1 nucleotides
HP15_rRNA5: HP15_rRNA5 - 23S ribosomal RNA, at 556,738 to 559,629
_rRNA5
HP15_rRNA6: HP15_rRNA6 - 5S ribosomal RNA, at 559,731 to 559,844
_rRNA6
HP15_538: HP15_538 - 2-isopropylmalate synthase, at 559,973 to 561,523
_538
HP15_539: HP15_539 - 2-isopropylmalate synthase, at 561,614 to 562,372
_539
HP15_540: HP15_540 - ribosomal-protein-alanine acetyltransferase, at 562,372 to 562,857
_540
Position (kb) 559
560
561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 559.929 kb on + strand at 559.934 kb on - strand at 559.936 kb on + strand at 560.050 kb on - strand at 560.055 kb on - strand at 560.852 kb on + strand, within HP15_538 at 560.947 kb on + strand, within HP15_538 at 560.960 kb on - strand, within HP15_538 at 561.040 kb on + strand, within HP15_538 at 561.058 kb on + strand, within HP15_538 at 561.155 kb on + strand, within HP15_538 at 561.158 kb on - strand, within HP15_538 at 561.160 kb on + strand, within HP15_538 at 561.184 kb on + strand, within HP15_538 at 561.250 kb on - strand, within HP15_538 at 561.277 kb on + strand, within HP15_538 at 561.285 kb on - strand, within HP15_538 at 561.354 kb on + strand, within HP15_538 at 561.382 kb on + strand at 561.459 kb on - strand at 562.445 kb on + strand, within HP15_540
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 559,929 + +1.0 559,934 - -1.9 559,936 + +0.5 560,050 - -0.4 560,055 - -0.4 560,852 + HP15_538 0.57 +1.4 560,947 + HP15_538 0.63 -2.7 560,960 - HP15_538 0.64 +2.4 561,040 + HP15_538 0.69 -0.1 561,058 + HP15_538 0.70 -1.6 561,155 + HP15_538 0.76 +1.2 561,158 - HP15_538 0.76 -2.9 561,160 + HP15_538 0.77 +2.7 561,184 + HP15_538 0.78 -1.5 561,250 - HP15_538 0.82 +0.9 561,277 + HP15_538 0.84 +2.7 561,285 - HP15_538 0.85 +0.5 561,354 + HP15_538 0.89 -0.4 561,382 + -1.5 561,459 - -1.0 562,445 + HP15_540 0.15 +0.1
Or see this region's nucleotide sequence