Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00530 and PGA1_c00540 are separated by 5 nucleotides PGA1_c00540 and PGA1_c00550 are separated by 150 nucleotides PGA1_c00550 and PGA1_c00570 are separated by 4 nucleotides PGA1_c00570 and PGA1_c00590 are separated by 41 nucleotides PGA1_c00590 and PGA1_c00600 are separated by 57 nucleotides
PGA1_c00530: PGA1_c00530 - Phosphotransferase enzyme family., at 56,962 to 57,990
_c00530
PGA1_c00540: PGA1_c00540 - putative 16S rRNA-processing protein RimM, at 57,996 to 58,499
_c00540
PGA1_c00550: PGA1_c00550 - putative cob(II)yrinic acid a,c-diamide reductase, at 58,650 to 59,291
_c00550
PGA1_c00570: PGA1_c00570 - 30S ribosomal protein S16, at 59,296 to 59,655
_c00570
PGA1_c00590: PGA1_c00590 - chorismate mutase, at 59,697 to 60,005
_c00590
PGA1_c00600: PGA1_c00600 - putative acetyltransferase, at 60,063 to 60,665
_c00600
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 57.664 kb on - strand, within PGA1_c00530 at 57.737 kb on + strand, within PGA1_c00530 at 57.737 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.806 kb on + strand, within PGA1_c00530 at 57.816 kb on + strand, within PGA1_c00530 at 57.816 kb on + strand, within PGA1_c00530 at 57.824 kb on - strand, within PGA1_c00530 at 57.824 kb on - strand, within PGA1_c00530 at 57.885 kb on + strand, within PGA1_c00530 at 57.887 kb on + strand, within PGA1_c00530 at 57.887 kb on + strand, within PGA1_c00530 at 57.890 kb on - strand at 57.892 kb on + strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.900 kb on - strand at 57.979 kb on + strand at 57.987 kb on - strand at 57.994 kb on + strand at 58.002 kb on - strand at 58.002 kb on - strand at 58.510 kb on - strand at 58.520 kb on - strand at 58.528 kb on - strand at 58.530 kb on - strand at 58.543 kb on - strand at 58.556 kb on + strand at 58.564 kb on - strand at 58.591 kb on - strand at 58.633 kb on + strand at 58.640 kb on + strand at 58.643 kb on - strand at 58.682 kb on + strand at 58.690 kb on - strand at 58.830 kb on + strand, within PGA1_c00550 at 58.832 kb on - strand, within PGA1_c00550 at 58.837 kb on - strand, within PGA1_c00550 at 58.837 kb on - strand, within PGA1_c00550 at 58.850 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.880 kb on + strand, within PGA1_c00550 at 58.908 kb on + strand, within PGA1_c00550 at 59.000 kb on + strand, within PGA1_c00550 at 59.010 kb on + strand, within PGA1_c00550 at 59.159 kb on + strand, within PGA1_c00550 at 59.190 kb on - strand, within PGA1_c00550 at 60.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 57,664 - PGA1_c00530 0.68 +1.1 57,737 + PGA1_c00530 0.75 -2.0 57,737 - PGA1_c00530 0.75 +0.3 57,745 - PGA1_c00530 0.76 +0.3 57,745 - PGA1_c00530 0.76 -0.1 57,745 - PGA1_c00530 0.76 +0.2 57,806 + PGA1_c00530 0.82 +0.1 57,816 + PGA1_c00530 0.83 -3.2 57,816 + PGA1_c00530 0.83 -1.4 57,824 - PGA1_c00530 0.84 +0.1 57,824 - PGA1_c00530 0.84 -1.6 57,885 + PGA1_c00530 0.90 -2.0 57,887 + PGA1_c00530 0.90 -1.1 57,887 + PGA1_c00530 0.90 -1.8 57,890 - -0.5 57,892 + -1.8 57,895 - +1.2 57,895 - +1.4 57,895 - +0.2 57,895 - -2.7 57,895 - +0.7 57,895 - +1.3 57,895 - +0.7 57,900 - +1.3 57,979 + -2.4 57,987 - +0.1 57,994 + +0.2 58,002 - +4.1 58,002 - -3.5 58,510 - +0.5 58,520 - +0.6 58,528 - +2.4 58,530 - -2.1 58,543 - +0.1 58,556 + +1.3 58,564 - +0.6 58,591 - -0.0 58,633 + +0.5 58,640 + -0.3 58,643 - -0.6 58,682 + -0.8 58,690 - -0.9 58,830 + PGA1_c00550 0.28 -3.1 58,832 - PGA1_c00550 0.28 +1.0 58,837 - PGA1_c00550 0.29 -0.2 58,837 - PGA1_c00550 0.29 +0.7 58,850 + PGA1_c00550 0.31 -0.2 58,855 + PGA1_c00550 0.32 -0.4 58,855 + PGA1_c00550 0.32 +1.8 58,855 + PGA1_c00550 0.32 +0.4 58,863 - PGA1_c00550 0.33 +0.1 58,863 - PGA1_c00550 0.33 +1.6 58,863 - PGA1_c00550 0.33 +0.7 58,880 + PGA1_c00550 0.36 +2.4 58,908 + PGA1_c00550 0.40 -0.1 59,000 + PGA1_c00550 0.55 +0.9 59,010 + PGA1_c00550 0.56 +1.1 59,159 + PGA1_c00550 0.79 +3.1 59,190 - PGA1_c00550 0.84 -1.1 60,055 - +1.5
Or see this region's nucleotide sequence