Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g161 and HP15_p187g162 are separated by 1 nucleotides HP15_p187g162 and HP15_p187g163 are separated by 326 nucleotides
HP15_p187g161: HP15_p187g161 - conserved hypothetical protein, at 163,965 to 164,936
_p187g161
HP15_p187g162: HP15_p187g162 - hypothetical protein, at 164,938 to 165,183
_p187g162
HP15_p187g163: HP15_p187g163 - phage integrase family protein, at 165,510 to 166,814
_p187g163
Position (kb) 164
165
166 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 163.940 kb on + strand at 163.948 kb on - strand at 163.948 kb on - strand at 163.964 kb on + strand at 163.969 kb on + strand at 163.972 kb on - strand at 163.986 kb on - strand at 164.002 kb on + strand at 164.161 kb on + strand, within HP15_p187g161 at 164.169 kb on - strand, within HP15_p187g161 at 164.169 kb on - strand, within HP15_p187g161 at 164.220 kb on + strand, within HP15_p187g161 at 164.250 kb on - strand, within HP15_p187g161 at 164.338 kb on - strand, within HP15_p187g161 at 164.344 kb on - strand, within HP15_p187g161 at 164.344 kb on - strand, within HP15_p187g161 at 164.344 kb on - strand, within HP15_p187g161 at 164.344 kb on - strand, within HP15_p187g161 at 164.344 kb on - strand, within HP15_p187g161 at 164.366 kb on - strand, within HP15_p187g161 at 164.370 kb on - strand, within HP15_p187g161 at 164.372 kb on + strand, within HP15_p187g161 at 164.507 kb on + strand, within HP15_p187g161 at 164.508 kb on + strand, within HP15_p187g161 at 164.518 kb on + strand, within HP15_p187g161 at 164.518 kb on - strand, within HP15_p187g161 at 164.526 kb on - strand, within HP15_p187g161 at 164.541 kb on - strand, within HP15_p187g161 at 164.541 kb on - strand, within HP15_p187g161 at 164.541 kb on - strand, within HP15_p187g161 at 164.543 kb on - strand, within HP15_p187g161 at 164.558 kb on - strand, within HP15_p187g161 at 164.560 kb on + strand, within HP15_p187g161 at 164.581 kb on + strand, within HP15_p187g161 at 164.639 kb on + strand, within HP15_p187g161 at 164.639 kb on + strand, within HP15_p187g161 at 164.642 kb on - strand, within HP15_p187g161 at 164.647 kb on - strand, within HP15_p187g161 at 164.647 kb on - strand, within HP15_p187g161 at 164.677 kb on + strand, within HP15_p187g161 at 164.677 kb on + strand, within HP15_p187g161 at 164.677 kb on + strand, within HP15_p187g161 at 164.677 kb on + strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.685 kb on - strand, within HP15_p187g161 at 164.695 kb on + strand, within HP15_p187g161 at 164.745 kb on - strand, within HP15_p187g161 at 164.765 kb on + strand, within HP15_p187g161 at 164.847 kb on + strand at 164.847 kb on + strand at 164.859 kb on - strand at 164.859 kb on - strand at 164.860 kb on + strand at 164.867 kb on - strand at 164.917 kb on + strand at 164.988 kb on + strand, within HP15_p187g162 at 164.988 kb on + strand, within HP15_p187g162 at 164.996 kb on - strand, within HP15_p187g162 at 165.048 kb on + strand, within HP15_p187g162 at 165.050 kb on + strand, within HP15_p187g162 at 165.058 kb on - strand, within HP15_p187g162 at 165.077 kb on + strand, within HP15_p187g162 at 165.085 kb on - strand, within HP15_p187g162 at 165.120 kb on + strand, within HP15_p187g162 at 165.453 kb on - strand at 165.490 kb on - strand at 165.500 kb on - strand at 165.557 kb on - strand at 165.567 kb on - strand at 165.606 kb on + strand at 165.614 kb on - strand at 165.650 kb on - strand, within HP15_p187g163 at 165.650 kb on - strand, within HP15_p187g163 at 165.651 kb on - strand, within HP15_p187g163 at 165.688 kb on + strand, within HP15_p187g163 at 165.813 kb on + strand, within HP15_p187g163 at 165.838 kb on - strand, within HP15_p187g163 at 165.904 kb on - strand, within HP15_p187g163 at 165.924 kb on + strand, within HP15_p187g163 at 165.932 kb on - strand, within HP15_p187g163 at 166.022 kb on + strand, within HP15_p187g163 at 166.027 kb on + strand, within HP15_p187g163 at 166.040 kb on + strand, within HP15_p187g163
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 163,940 + -0.0 163,948 - +0.6 163,948 - +0.8 163,964 + +0.9 163,969 + +1.1 163,972 - -1.1 163,986 - -0.2 164,002 + +0.5 164,161 + HP15_p187g161 0.20 +0.1 164,169 - HP15_p187g161 0.21 -1.2 164,169 - HP15_p187g161 0.21 -0.1 164,220 + HP15_p187g161 0.26 +0.8 164,250 - HP15_p187g161 0.29 +0.2 164,338 - HP15_p187g161 0.38 -1.0 164,344 - HP15_p187g161 0.39 -0.3 164,344 - HP15_p187g161 0.39 -3.6 164,344 - HP15_p187g161 0.39 +0.2 164,344 - HP15_p187g161 0.39 +0.3 164,344 - HP15_p187g161 0.39 +0.4 164,366 - HP15_p187g161 0.41 -1.6 164,370 - HP15_p187g161 0.42 +1.4 164,372 + HP15_p187g161 0.42 -3.8 164,507 + HP15_p187g161 0.56 -2.8 164,508 + HP15_p187g161 0.56 -0.4 164,518 + HP15_p187g161 0.57 -0.2 164,518 - HP15_p187g161 0.57 -0.0 164,526 - HP15_p187g161 0.58 +0.3 164,541 - HP15_p187g161 0.59 +1.4 164,541 - HP15_p187g161 0.59 +0.2 164,541 - HP15_p187g161 0.59 -1.0 164,543 - HP15_p187g161 0.59 +0.1 164,558 - HP15_p187g161 0.61 -0.1 164,560 + HP15_p187g161 0.61 +2.0 164,581 + HP15_p187g161 0.63 +2.0 164,639 + HP15_p187g161 0.69 -0.3 164,639 + HP15_p187g161 0.69 -0.8 164,642 - HP15_p187g161 0.70 -3.3 164,647 - HP15_p187g161 0.70 -1.5 164,647 - HP15_p187g161 0.70 +2.7 164,677 + HP15_p187g161 0.73 +0.5 164,677 + HP15_p187g161 0.73 -0.0 164,677 + HP15_p187g161 0.73 -0.0 164,677 + HP15_p187g161 0.73 +1.5 164,685 - HP15_p187g161 0.74 +0.5 164,685 - HP15_p187g161 0.74 -1.6 164,685 - HP15_p187g161 0.74 +0.2 164,685 - HP15_p187g161 0.74 +0.2 164,685 - HP15_p187g161 0.74 -0.0 164,685 - HP15_p187g161 0.74 -0.0 164,685 - HP15_p187g161 0.74 -2.0 164,695 + HP15_p187g161 0.75 +0.1 164,745 - HP15_p187g161 0.80 -2.6 164,765 + HP15_p187g161 0.82 -0.0 164,847 + +1.0 164,847 + -0.3 164,859 - -0.4 164,859 - -0.4 164,860 + -3.5 164,867 - +0.8 164,917 + -0.2 164,988 + HP15_p187g162 0.20 -3.3 164,988 + HP15_p187g162 0.20 -0.0 164,996 - HP15_p187g162 0.24 +0.2 165,048 + HP15_p187g162 0.45 -3.2 165,050 + HP15_p187g162 0.46 -1.1 165,058 - HP15_p187g162 0.49 +0.8 165,077 + HP15_p187g162 0.57 -0.5 165,085 - HP15_p187g162 0.60 -0.7 165,120 + HP15_p187g162 0.74 -1.4 165,453 - +0.0 165,490 - -0.3 165,500 - -2.0 165,557 - -2.6 165,567 - -1.0 165,606 + -1.7 165,614 - +0.4 165,650 - HP15_p187g163 0.11 -2.0 165,650 - HP15_p187g163 0.11 +0.2 165,651 - HP15_p187g163 0.11 +1.6 165,688 + HP15_p187g163 0.14 +0.7 165,813 + HP15_p187g163 0.23 -3.7 165,838 - HP15_p187g163 0.25 -0.9 165,904 - HP15_p187g163 0.30 -3.3 165,924 + HP15_p187g163 0.32 -0.3 165,932 - HP15_p187g163 0.32 -0.9 166,022 + HP15_p187g163 0.39 -1.0 166,027 + HP15_p187g163 0.40 -0.2 166,040 + HP15_p187g163 0.41 -0.0
Or see this region's nucleotide sequence