Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_426 and HP15_427 are separated by 254 nucleotides HP15_427 and HP15_428 are separated by 173 nucleotides
HP15_426: HP15_426 - signal transduction histidine kinase, nitrogen specific, NtrB, at 424,158 to 425,252
_426
HP15_427: HP15_427 - conserved hypothetical protein, secreted, at 425,507 to 426,031
_427
HP15_428: HP15_428 - glutamine synthetase, type I, at 426,205 to 427,608
_428
Position (kb) 425
426
427 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 424.529 kb on + strand, within HP15_426 at 424.540 kb on + strand, within HP15_426 at 424.540 kb on + strand, within HP15_426 at 424.621 kb on - strand, within HP15_426 at 424.666 kb on + strand, within HP15_426 at 424.674 kb on - strand, within HP15_426 at 424.778 kb on + strand, within HP15_426 at 424.976 kb on + strand, within HP15_426 at 425.017 kb on + strand, within HP15_426 at 425.154 kb on + strand at 425.189 kb on - strand at 425.213 kb on - strand at 425.407 kb on + strand at 425.407 kb on + strand at 425.415 kb on - strand at 425.473 kb on + strand at 425.518 kb on - strand at 425.704 kb on + strand, within HP15_427 at 425.704 kb on + strand, within HP15_427 at 425.712 kb on - strand, within HP15_427 at 425.851 kb on + strand, within HP15_427 at 425.851 kb on + strand, within HP15_427 at 425.851 kb on + strand, within HP15_427 at 425.856 kb on + strand, within HP15_427 at 425.864 kb on - strand, within HP15_427 at 425.866 kb on + strand, within HP15_427 at 425.883 kb on + strand, within HP15_427 at 425.920 kb on + strand, within HP15_427 at 425.928 kb on - strand, within HP15_427 at 425.928 kb on - strand, within HP15_427 at 425.966 kb on - strand, within HP15_427 at 426.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 424,529 + HP15_426 0.34 +0.1 424,540 + HP15_426 0.35 +1.6 424,540 + HP15_426 0.35 -0.7 424,621 - HP15_426 0.42 +1.0 424,666 + HP15_426 0.46 +1.2 424,674 - HP15_426 0.47 -0.2 424,778 + HP15_426 0.57 +1.3 424,976 + HP15_426 0.75 +0.1 425,017 + HP15_426 0.78 +0.2 425,154 + +1.0 425,189 - -0.1 425,213 - +1.6 425,407 + +0.5 425,407 + +0.2 425,415 - +0.3 425,473 + +3.1 425,518 - -1.9 425,704 + HP15_427 0.38 -1.9 425,704 + HP15_427 0.38 -0.7 425,712 - HP15_427 0.39 -2.6 425,851 + HP15_427 0.66 -1.5 425,851 + HP15_427 0.66 -3.7 425,851 + HP15_427 0.66 -0.3 425,856 + HP15_427 0.66 -1.1 425,864 - HP15_427 0.68 -1.9 425,866 + HP15_427 0.68 -0.1 425,883 + HP15_427 0.72 +0.1 425,920 + HP15_427 0.79 -4.5 425,928 - HP15_427 0.80 +0.1 425,928 - HP15_427 0.80 -0.6 425,966 - HP15_427 0.87 -4.2 426,167 + -0.3
Or see this region's nucleotide sequence