Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g52

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_p187g50 and HP15_p187g51 overlap by 4 nucleotidesHP15_p187g51 and HP15_p187g52 are separated by 94 nucleotidesHP15_p187g52 and HP15_p187g53 are separated by 452 nucleotides HP15_p187g50: HP15_p187g50 - glucose-1-phosphate thymidylyltransferase 1, at 43,135 to 44,019 _p187g50 HP15_p187g51: HP15_p187g51 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 44,016 to 44,561 _p187g51 HP15_p187g52: HP15_p187g52 - hypothetical protein, at 44,656 to 44,775 _p187g52 HP15_p187g53: HP15_p187g53 - polysaccharide biosynthesis-like protein, at 45,228 to 46,652 _p187g53 Position (kb) 44 45Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 43.745 kb on + strand, within HP15_p187g50at 43.762 kb on - strand, within HP15_p187g50at 43.782 kb on - strand, within HP15_p187g50at 44.143 kb on + strand, within HP15_p187g51at 44.151 kb on - strand, within HP15_p187g51at 44.161 kb on - strand, within HP15_p187g51at 44.161 kb on - strand, within HP15_p187g51at 44.166 kb on - strand, within HP15_p187g51at 44.219 kb on + strand, within HP15_p187g51at 44.222 kb on - strand, within HP15_p187g51at 44.227 kb on - strand, within HP15_p187g51at 44.243 kb on + strand, within HP15_p187g51at 44.262 kb on + strand, within HP15_p187g51at 44.262 kb on + strand, within HP15_p187g51at 44.263 kb on + strand, within HP15_p187g51at 44.271 kb on - strand, within HP15_p187g51at 44.308 kb on + strand, within HP15_p187g51at 44.308 kb on + strand, within HP15_p187g51at 44.316 kb on - strand, within HP15_p187g51at 44.316 kb on - strand, within HP15_p187g51at 44.332 kb on + strand, within HP15_p187g51at 44.339 kb on + strand, within HP15_p187g51at 44.344 kb on + strand, within HP15_p187g51at 44.347 kb on - strand, within HP15_p187g51at 44.391 kb on - strand, within HP15_p187g51at 44.425 kb on - strand, within HP15_p187g51at 44.457 kb on + strand, within HP15_p187g51at 44.465 kb on - strand, within HP15_p187g51at 44.494 kb on + strand, within HP15_p187g51at 44.534 kb on + strandat 44.534 kb on + strandat 44.537 kb on - strandat 44.537 kb on - strandat 44.667 kb on - strandat 44.691 kb on + strand, within HP15_p187g52at 44.758 kb on + strand, within HP15_p187g52at 44.775 kb on + strandat 44.775 kb on + strandat 44.775 kb on + strandat 44.775 kb on + strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.783 kb on - strandat 44.884 kb on + strandat 44.906 kb on - strandat 44.910 kb on + strandat 44.942 kb on - strandat 44.942 kb on - strandat 44.942 kb on - strandat 44.950 kb on + strandat 44.950 kb on - strandat 44.961 kb on + strandat 44.965 kb on - strandat 44.965 kb on - strandat 45.042 kb on + strandat 45.042 kb on + strandat 45.050 kb on - strandat 45.052 kb on + strandat 45.068 kb on + strandat 45.076 kb on + strandat 45.084 kb on - strandat 45.092 kb on + strandat 45.092 kb on + strandat 45.102 kb on - strandat 45.113 kb on + strandat 45.128 kb on - strandat 45.220 kb on + strandat 45.228 kb on - strandat 45.228 kb on - strandat 45.275 kb on - strandat 45.324 kb on - strandat 45.333 kb on - strandat 45.359 kb on + strandat 45.365 kb on - strandat 45.365 kb on - strandat 45.365 kb on - strandat 45.367 kb on - strandat 45.367 kb on - strandat 45.367 kb on - strandat 45.380 kb on + strand, within HP15_p187g53at 45.388 kb on - strand, within HP15_p187g53at 45.388 kb on - strand, within HP15_p187g53at 45.388 kb on - strand, within HP15_p187g53at 45.400 kb on + strand, within HP15_p187g53at 45.400 kb on + strand, within HP15_p187g53at 45.418 kb on + strand, within HP15_p187g53at 45.418 kb on + strand, within HP15_p187g53at 45.418 kb on + strand, within HP15_p187g53at 45.418 kb on + strand, within HP15_p187g53at 45.418 kb on + strand, within HP15_p187g53at 45.425 kb on + strand, within HP15_p187g53at 45.426 kb on - strand, within HP15_p187g53at 45.426 kb on - strand, within HP15_p187g53at 45.432 kb on + strand, within HP15_p187g53at 45.643 kb on + strand, within HP15_p187g53at 45.655 kb on + strand, within HP15_p187g53at 45.655 kb on + strand, within HP15_p187g53at 45.658 kb on - strand, within HP15_p187g53at 45.663 kb on - strand, within HP15_p187g53at 45.669 kb on + strand, within HP15_p187g53at 45.686 kb on + strand, within HP15_p187g53at 45.696 kb on - strand, within HP15_p187g53at 45.724 kb on + strand, within HP15_p187g53at 45.759 kb on + strand, within HP15_p187g53

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
remove
43,745 + HP15_p187g50 0.69 -0.1
43,762 - HP15_p187g50 0.71 +0.8
43,782 - HP15_p187g50 0.73 +1.4
44,143 + HP15_p187g51 0.23 -0.2
44,151 - HP15_p187g51 0.25 +0.7
44,161 - HP15_p187g51 0.27 +1.1
44,161 - HP15_p187g51 0.27 -3.0
44,166 - HP15_p187g51 0.27 +0.6
44,219 + HP15_p187g51 0.37 -0.0
44,222 - HP15_p187g51 0.38 -0.8
44,227 - HP15_p187g51 0.39 -2.0
44,243 + HP15_p187g51 0.42 -0.2
44,262 + HP15_p187g51 0.45 -1.2
44,262 + HP15_p187g51 0.45 +0.3
44,263 + HP15_p187g51 0.45 -1.0
44,271 - HP15_p187g51 0.47 +1.2
44,308 + HP15_p187g51 0.53 -3.0
44,308 + HP15_p187g51 0.53 -1.6
44,316 - HP15_p187g51 0.55 +1.3
44,316 - HP15_p187g51 0.55 -3.5
44,332 + HP15_p187g51 0.58 +0.6
44,339 + HP15_p187g51 0.59 -2.3
44,344 + HP15_p187g51 0.60 +1.1
44,347 - HP15_p187g51 0.61 +0.2
44,391 - HP15_p187g51 0.69 -2.0
44,425 - HP15_p187g51 0.75 -1.3
44,457 + HP15_p187g51 0.81 -1.0
44,465 - HP15_p187g51 0.82 +1.6
44,494 + HP15_p187g51 0.88 +0.2
44,534 + +0.5
44,534 + +1.0
44,537 - +1.1
44,537 - -1.0
44,667 - +1.6
44,691 + HP15_p187g52 0.29 -1.0
44,758 + HP15_p187g52 0.85 -1.1
44,775 + -0.2
44,775 + -0.3
44,775 + +1.3
44,775 + +0.4
44,783 - +1.7
44,783 - -2.0
44,783 - +0.1
44,783 - +0.4
44,783 - -0.2
44,783 - +0.3
44,783 - -4.5
44,884 + +0.3
44,906 - -0.1
44,910 + -0.3
44,942 - +1.5
44,942 - -0.6
44,942 - +0.4
44,950 + -0.5
44,950 - +0.6
44,961 + +0.3
44,965 - +0.9
44,965 - +0.8
45,042 + -0.7
45,042 + -3.5
45,050 - +2.8
45,052 + -1.6
45,068 + +0.2
45,076 + -0.8
45,084 - +2.8
45,092 + +0.3
45,092 + -0.7
45,102 - -0.0
45,113 + -1.1
45,128 - +0.5
45,220 + -2.1
45,228 - -0.1
45,228 - +0.5
45,275 - -0.4
45,324 - +1.5
45,333 - +1.1
45,359 + -0.4
45,365 - +2.6
45,365 - +0.5
45,365 - -3.3
45,367 - +1.1
45,367 - +1.3
45,367 - +0.0
45,380 + HP15_p187g53 0.11 +0.9
45,388 - HP15_p187g53 0.11 -2.0
45,388 - HP15_p187g53 0.11 +0.4
45,388 - HP15_p187g53 0.11 +0.5
45,400 + HP15_p187g53 0.12 +0.4
45,400 + HP15_p187g53 0.12 +3.0
45,418 + HP15_p187g53 0.13 -0.3
45,418 + HP15_p187g53 0.13 +0.6
45,418 + HP15_p187g53 0.13 -0.3
45,418 + HP15_p187g53 0.13 -0.0
45,418 + HP15_p187g53 0.13 -0.5
45,425 + HP15_p187g53 0.14 +0.1
45,426 - HP15_p187g53 0.14 +0.5
45,426 - HP15_p187g53 0.14 +0.7
45,432 + HP15_p187g53 0.14 +1.4
45,643 + HP15_p187g53 0.29 -0.0
45,655 + HP15_p187g53 0.30 -1.3
45,655 + HP15_p187g53 0.30 +0.3
45,658 - HP15_p187g53 0.30 -1.6
45,663 - HP15_p187g53 0.31 +0.4
45,669 + HP15_p187g53 0.31 +1.1
45,686 + HP15_p187g53 0.32 -3.2
45,696 - HP15_p187g53 0.33 -2.3
45,724 + HP15_p187g53 0.35 -0.7
45,759 + HP15_p187g53 0.37 +0.4

Or see this region's nucleotide sequence