Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g39

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g36 and HP15_p42g37 are separated by 168 nucleotidesHP15_p42g37 and HP15_p42g38 are separated by 18 nucleotidesHP15_p42g38 and HP15_p42g39 are separated by 13 nucleotidesHP15_p42g39 and HP15_p42g40 overlap by 4 nucleotidesHP15_p42g40 and HP15_p42g41 are separated by 11 nucleotides HP15_p42g36: HP15_p42g36 - hypothetical protein, at 28,649 to 28,759 _p42g36 HP15_p42g37: HP15_p42g37 - conserved hypothetical protein, at 28,928 to 29,197 _p42g37 HP15_p42g38: HP15_p42g38 - conserved hypothetical protein, secreted, at 29,216 to 29,641 _p42g38 HP15_p42g39: HP15_p42g39 - TrbP protein, at 29,655 to 30,383 _p42g39 HP15_p42g40: HP15_p42g40 - TrbN, putative muramidase, at 30,380 to 31,015 _p42g40 HP15_p42g41: HP15_p42g41 - TraL protein, at 31,027 to 31,509 _p42g41 Position (kb) 29 30 31Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 28.699 kb on - strand, within HP15_p42g36at 28.791 kb on - strandat 28.791 kb on - strandat 28.798 kb on + strandat 28.798 kb on + strandat 28.798 kb on - strandat 28.806 kb on - strandat 28.882 kb on + strandat 28.898 kb on + strandat 28.966 kb on - strand, within HP15_p42g37at 28.972 kb on + strand, within HP15_p42g37at 29.061 kb on + strand, within HP15_p42g37at 29.061 kb on + strand, within HP15_p42g37at 29.069 kb on - strand, within HP15_p42g37at 29.071 kb on + strand, within HP15_p42g37at 29.071 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.079 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.136 kb on + strand, within HP15_p42g37at 29.201 kb on - strandat 29.222 kb on - strandat 29.257 kb on + strandat 29.257 kb on + strandat 29.257 kb on + strandat 29.257 kb on + strandat 29.257 kb on + strandat 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.387 kb on - strand, within HP15_p42g38at 29.393 kb on - strand, within HP15_p42g38at 29.404 kb on - strand, within HP15_p42g38at 29.423 kb on - strand, within HP15_p42g38at 29.457 kb on - strand, within HP15_p42g38at 29.524 kb on - strand, within HP15_p42g38at 29.584 kb on - strand, within HP15_p42g38at 29.584 kb on - strand, within HP15_p42g38at 29.604 kb on - strandat 29.612 kb on + strandat 29.612 kb on + strandat 29.612 kb on + strandat 29.612 kb on + strandat 29.620 kb on - strandat 29.620 kb on - strandat 29.620 kb on - strandat 29.620 kb on - strandat 29.620 kb on - strandat 29.679 kb on + strandat 29.722 kb on - strandat 29.795 kb on - strand, within HP15_p42g39at 29.845 kb on - strand, within HP15_p42g39at 29.847 kb on + strand, within HP15_p42g39at 29.847 kb on + strand, within HP15_p42g39at 29.855 kb on + strand, within HP15_p42g39at 29.855 kb on - strand, within HP15_p42g39at 29.877 kb on + strand, within HP15_p42g39at 29.882 kb on + strand, within HP15_p42g39at 29.907 kb on - strand, within HP15_p42g39at 29.911 kb on + strand, within HP15_p42g39at 29.964 kb on + strand, within HP15_p42g39at 29.966 kb on - strand, within HP15_p42g39at 29.972 kb on - strand, within HP15_p42g39at 29.972 kb on - strand, within HP15_p42g39at 29.991 kb on - strand, within HP15_p42g39at 30.002 kb on + strand, within HP15_p42g39at 30.080 kb on - strand, within HP15_p42g39at 30.085 kb on - strand, within HP15_p42g39at 30.085 kb on - strand, within HP15_p42g39at 30.171 kb on - strand, within HP15_p42g39at 30.176 kb on - strand, within HP15_p42g39at 30.176 kb on - strand, within HP15_p42g39at 30.188 kb on - strand, within HP15_p42g39at 30.278 kb on - strand, within HP15_p42g39at 30.285 kb on - strand, within HP15_p42g39at 30.298 kb on - strand, within HP15_p42g39at 30.308 kb on - strand, within HP15_p42g39at 30.308 kb on - strand, within HP15_p42g39at 30.308 kb on - strand, within HP15_p42g39at 30.324 kb on - strandat 30.343 kb on - strandat 30.414 kb on - strandat 30.421 kb on + strandat 30.421 kb on + strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.455 kb on + strand, within HP15_p42g40at 30.455 kb on + strand, within HP15_p42g40at 30.455 kb on + strand, within HP15_p42g40at 30.455 kb on + strand, within HP15_p42g40at 30.455 kb on + strand, within HP15_p42g40at 30.463 kb on - strand, within HP15_p42g40at 30.463 kb on - strand, within HP15_p42g40at 30.463 kb on - strand, within HP15_p42g40at 30.463 kb on - strand, within HP15_p42g40at 30.568 kb on - strand, within HP15_p42g40at 30.568 kb on - strand, within HP15_p42g40at 30.595 kb on + strand, within HP15_p42g40at 30.620 kb on - strand, within HP15_p42g40at 30.629 kb on + strand, within HP15_p42g40at 30.708 kb on + strand, within HP15_p42g40at 30.713 kb on + strand, within HP15_p42g40at 30.718 kb on + strand, within HP15_p42g40at 30.726 kb on - strand, within HP15_p42g40at 30.726 kb on - strand, within HP15_p42g40at 30.726 kb on - strand, within HP15_p42g40at 30.726 kb on - strand, within HP15_p42g40at 30.741 kb on - strand, within HP15_p42g40at 30.741 kb on - strand, within HP15_p42g40at 30.771 kb on - strand, within HP15_p42g40at 30.780 kb on - strand, within HP15_p42g40at 30.818 kb on - strand, within HP15_p42g40at 30.825 kb on + strand, within HP15_p42g40at 30.825 kb on + strand, within HP15_p42g40at 30.825 kb on + strand, within HP15_p42g40at 30.825 kb on - strand, within HP15_p42g40at 30.833 kb on - strand, within HP15_p42g40at 30.833 kb on - strand, within HP15_p42g40at 30.833 kb on - strand, within HP15_p42g40at 30.835 kb on + strand, within HP15_p42g40at 30.835 kb on + strand, within HP15_p42g40at 30.838 kb on - strand, within HP15_p42g40at 30.840 kb on + strand, within HP15_p42g40at 30.914 kb on - strand, within HP15_p42g40at 30.914 kb on - strand, within HP15_p42g40at 31.050 kb on - strandat 31.062 kb on - strandat 31.087 kb on + strand, within HP15_p42g41at 31.105 kb on + strand, within HP15_p42g41at 31.128 kb on + strand, within HP15_p42g41at 31.151 kb on + strand, within HP15_p42g41at 31.151 kb on - strand, within HP15_p42g41at 31.213 kb on + strand, within HP15_p42g41at 31.218 kb on + strand, within HP15_p42g41at 31.221 kb on - strand, within HP15_p42g41at 31.223 kb on + strand, within HP15_p42g41at 31.223 kb on + strand, within HP15_p42g41at 31.223 kb on + strand, within HP15_p42g41at 31.226 kb on - strand, within HP15_p42g41at 31.231 kb on - strand, within HP15_p42g41at 31.231 kb on - strand, within HP15_p42g41at 31.231 kb on - strand, within HP15_p42g41at 31.263 kb on + strand, within HP15_p42g41at 31.271 kb on + strand, within HP15_p42g41at 31.278 kb on + strand, within HP15_p42g41at 31.286 kb on + strand, within HP15_p42g41at 31.286 kb on + strand, within HP15_p42g41at 31.294 kb on - strand, within HP15_p42g41at 31.294 kb on - strand, within HP15_p42g41

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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28,699 - HP15_p42g36 0.45 +2.3
28,791 - -0.5
28,791 - +0.7
28,798 + -0.5
28,798 + +0.1
28,798 - +0.7
28,806 - +0.6
28,882 + +0.8
28,898 + -0.2
28,966 - HP15_p42g37 0.14 -0.7
28,972 + HP15_p42g37 0.16 -0.4
29,061 + HP15_p42g37 0.49 -2.3
29,061 + HP15_p42g37 0.49 +0.6
29,069 - HP15_p42g37 0.52 +0.0
29,071 + HP15_p42g37 0.53 -1.6
29,071 + HP15_p42g37 0.53 -0.3
29,076 + HP15_p42g37 0.55 +1.9
29,076 + HP15_p42g37 0.55 +2.2
29,076 + HP15_p42g37 0.55 +0.4
29,076 + HP15_p42g37 0.55 -0.2
29,076 + HP15_p42g37 0.55 +1.7
29,076 + HP15_p42g37 0.55 +0.6
29,076 + HP15_p42g37 0.55 +1.3
29,076 + HP15_p42g37 0.55 +0.9
29,076 + HP15_p42g37 0.55 -0.9
29,076 + HP15_p42g37 0.55 +1.4
29,076 + HP15_p42g37 0.55 +0.1
29,076 + HP15_p42g37 0.55 +0.5
29,076 + HP15_p42g37 0.55 -0.1
29,076 + HP15_p42g37 0.55 -2.4
29,076 + HP15_p42g37 0.55 +1.0
29,076 + HP15_p42g37 0.55 +0.5
29,076 + HP15_p42g37 0.55 +1.0
29,076 + HP15_p42g37 0.55 +0.3
29,079 - HP15_p42g37 0.56 -2.7
29,084 - HP15_p42g37 0.58 +2.4
29,084 - HP15_p42g37 0.58 +0.3
29,084 - HP15_p42g37 0.58 -1.0
29,084 - HP15_p42g37 0.58 -0.3
29,084 - HP15_p42g37 0.58 +0.8
29,084 - HP15_p42g37 0.58 -0.2
29,084 - HP15_p42g37 0.58 +0.1
29,084 - HP15_p42g37 0.58 +0.1
29,084 - HP15_p42g37 0.58 -0.3
29,084 - HP15_p42g37 0.58 +0.1
29,084 - HP15_p42g37 0.58 +2.1
29,084 - HP15_p42g37 0.58 +0.8
29,084 - HP15_p42g37 0.58 -0.5
29,136 + HP15_p42g37 0.77 +0.1
29,201 - +0.5
29,222 - -0.1
29,257 + +0.2
29,257 + +0.4
29,257 + +0.7
29,257 + +1.6
29,257 + +0.3
29,265 - HP15_p42g38 0.12 -1.4
29,265 - HP15_p42g38 0.12 -0.4
29,265 - HP15_p42g38 0.12 +0.1
29,265 - HP15_p42g38 0.12 -0.1
29,265 - HP15_p42g38 0.12 -0.5
29,265 - HP15_p42g38 0.12 +1.4
29,265 - HP15_p42g38 0.12 -3.2
29,265 - HP15_p42g38 0.12 -0.6
29,265 - HP15_p42g38 0.12 -0.4
29,265 - HP15_p42g38 0.12 -0.2
29,265 - HP15_p42g38 0.12 -0.3
29,387 - HP15_p42g38 0.40 -0.6
29,393 - HP15_p42g38 0.42 +2.1
29,404 - HP15_p42g38 0.44 -0.0
29,423 - HP15_p42g38 0.49 +0.8
29,457 - HP15_p42g38 0.57 -1.6
29,524 - HP15_p42g38 0.72 +0.1
29,584 - HP15_p42g38 0.86 -0.0
29,584 - HP15_p42g38 0.86 +0.7
29,604 - -1.3
29,612 + +2.0
29,612 + +0.7
29,612 + +0.9
29,612 + +1.0
29,620 - -0.6
29,620 - -1.1
29,620 - -0.4
29,620 - +0.5
29,620 - +0.3
29,679 + +0.3
29,722 - -0.1
29,795 - HP15_p42g39 0.19 -0.4
29,845 - HP15_p42g39 0.26 -2.5
29,847 + HP15_p42g39 0.26 -0.2
29,847 + HP15_p42g39 0.26 -2.2
29,855 + HP15_p42g39 0.27 +0.6
29,855 - HP15_p42g39 0.27 -0.3
29,877 + HP15_p42g39 0.30 +1.3
29,882 + HP15_p42g39 0.31 +1.1
29,907 - HP15_p42g39 0.35 +0.1
29,911 + HP15_p42g39 0.35 +1.6
29,964 + HP15_p42g39 0.42 -1.4
29,966 - HP15_p42g39 0.43 -1.2
29,972 - HP15_p42g39 0.43 -0.4
29,972 - HP15_p42g39 0.43 -0.1
29,991 - HP15_p42g39 0.46 -1.0
30,002 + HP15_p42g39 0.48 -0.6
30,080 - HP15_p42g39 0.58 -0.5
30,085 - HP15_p42g39 0.59 -0.2
30,085 - HP15_p42g39 0.59 +1.1
30,171 - HP15_p42g39 0.71 -0.2
30,176 - HP15_p42g39 0.71 -0.4
30,176 - HP15_p42g39 0.71 -2.3
30,188 - HP15_p42g39 0.73 -1.2
30,278 - HP15_p42g39 0.85 -1.3
30,285 - HP15_p42g39 0.86 -2.2
30,298 - HP15_p42g39 0.88 -0.9
30,308 - HP15_p42g39 0.90 +1.6
30,308 - HP15_p42g39 0.90 -0.1
30,308 - HP15_p42g39 0.90 +0.1
30,324 - -0.0
30,343 - +0.6
30,414 - -0.7
30,421 + -2.9
30,421 + +0.6
30,429 - +1.5
30,429 - -1.4
30,429 - +0.5
30,455 + HP15_p42g40 0.12 -0.7
30,455 + HP15_p42g40 0.12 -2.0
30,455 + HP15_p42g40 0.12 +1.1
30,455 + HP15_p42g40 0.12 +0.5
30,455 + HP15_p42g40 0.12 +0.2
30,463 - HP15_p42g40 0.13 -3.6
30,463 - HP15_p42g40 0.13 +0.7
30,463 - HP15_p42g40 0.13 -0.5
30,463 - HP15_p42g40 0.13 -0.3
30,568 - HP15_p42g40 0.30 +0.1
30,568 - HP15_p42g40 0.30 -0.4
30,595 + HP15_p42g40 0.34 +0.7
30,620 - HP15_p42g40 0.38 +0.7
30,629 + HP15_p42g40 0.39 -0.1
30,708 + HP15_p42g40 0.52 -0.6
30,713 + HP15_p42g40 0.52 -3.8
30,718 + HP15_p42g40 0.53 -2.2
30,726 - HP15_p42g40 0.54 -0.9
30,726 - HP15_p42g40 0.54 +0.5
30,726 - HP15_p42g40 0.54 -0.5
30,726 - HP15_p42g40 0.54 +0.4
30,741 - HP15_p42g40 0.57 -0.9
30,741 - HP15_p42g40 0.57 +1.2
30,771 - HP15_p42g40 0.61 -2.7
30,780 - HP15_p42g40 0.63 -2.9
30,818 - HP15_p42g40 0.69 -0.2
30,825 + HP15_p42g40 0.70 -0.4
30,825 + HP15_p42g40 0.70 +0.6
30,825 + HP15_p42g40 0.70 -0.5
30,825 - HP15_p42g40 0.70 -3.3
30,833 - HP15_p42g40 0.71 -0.3
30,833 - HP15_p42g40 0.71 -0.5
30,833 - HP15_p42g40 0.71 +1.0
30,835 + HP15_p42g40 0.72 -0.4
30,835 + HP15_p42g40 0.72 -0.6
30,838 - HP15_p42g40 0.72 -1.2
30,840 + HP15_p42g40 0.72 +1.2
30,914 - HP15_p42g40 0.84 +0.1
30,914 - HP15_p42g40 0.84 +0.3
31,050 - -0.1
31,062 - +0.5
31,087 + HP15_p42g41 0.12 -0.0
31,105 + HP15_p42g41 0.16 +0.8
31,128 + HP15_p42g41 0.21 -0.6
31,151 + HP15_p42g41 0.26 -0.7
31,151 - HP15_p42g41 0.26 +0.5
31,213 + HP15_p42g41 0.39 +1.5
31,218 + HP15_p42g41 0.40 -2.3
31,221 - HP15_p42g41 0.40 +0.2
31,223 + HP15_p42g41 0.41 +0.3
31,223 + HP15_p42g41 0.41 +0.4
31,223 + HP15_p42g41 0.41 -1.6
31,226 - HP15_p42g41 0.41 -0.1
31,231 - HP15_p42g41 0.42 -0.4
31,231 - HP15_p42g41 0.42 +0.2
31,231 - HP15_p42g41 0.42 +0.9
31,263 + HP15_p42g41 0.49 +0.2
31,271 + HP15_p42g41 0.51 -0.4
31,278 + HP15_p42g41 0.52 -0.6
31,286 + HP15_p42g41 0.54 +0.6
31,286 + HP15_p42g41 0.54 -0.4
31,294 - HP15_p42g41 0.55 -1.1
31,294 - HP15_p42g41 0.55 -0.6

Or see this region's nucleotide sequence