Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3913 and HP15_3914 are separated by 73 nucleotides HP15_3914 and HP15_3915 are separated by 110 nucleotides
HP15_3913: HP15_3913 - multidrug resistance protein NorM, at 4,141,477 to 4,142,898
_3913
HP15_3914: HP15_3914 - carboxylate/amino acid/amine transporter, at 4,142,972 to 4,143,856
_3914
HP15_3915: HP15_3915 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 4,143,967 to 4,145,583
_3915
Position (kb)
4142
4143
4144 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4142.364 kb on - strand, within HP15_3913 at 4142.387 kb on - strand, within HP15_3913 at 4142.478 kb on - strand, within HP15_3913 at 4142.489 kb on + strand, within HP15_3913 at 4142.497 kb on - strand, within HP15_3913 at 4142.503 kb on - strand, within HP15_3913 at 4142.614 kb on + strand, within HP15_3913 at 4142.616 kb on + strand, within HP15_3913 at 4142.817 kb on - strand at 4142.818 kb on + strand at 4142.831 kb on - strand at 4142.843 kb on + strand at 4142.888 kb on + strand at 4142.910 kb on - strand at 4142.910 kb on - strand at 4143.099 kb on + strand, within HP15_3914 at 4143.154 kb on - strand, within HP15_3914 at 4143.207 kb on - strand, within HP15_3914 at 4143.234 kb on + strand, within HP15_3914 at 4143.242 kb on + strand, within HP15_3914 at 4143.273 kb on + strand, within HP15_3914 at 4143.281 kb on - strand, within HP15_3914 at 4143.480 kb on - strand, within HP15_3914 at 4143.593 kb on - strand, within HP15_3914 at 4143.627 kb on + strand, within HP15_3914 at 4143.868 kb on + strand at 4143.868 kb on + strand at 4143.876 kb on - strand at 4143.876 kb on - strand at 4143.989 kb on - strand at 4144.025 kb on + strand at 4144.089 kb on - strand at 4144.197 kb on + strand, within HP15_3915 at 4144.231 kb on - strand, within HP15_3915 at 4144.238 kb on - strand, within HP15_3915 at 4144.240 kb on + strand, within HP15_3915 at 4144.248 kb on - strand, within HP15_3915 at 4144.248 kb on - strand, within HP15_3915 at 4144.281 kb on + strand, within HP15_3915 at 4144.364 kb on + strand, within HP15_3915 at 4144.504 kb on - strand, within HP15_3915 at 4144.538 kb on + strand, within HP15_3915 at 4144.565 kb on + strand, within HP15_3915
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 4,142,364 - HP15_3913 0.62 +0.4 4,142,387 - HP15_3913 0.64 -0.4 4,142,478 - HP15_3913 0.70 -0.1 4,142,489 + HP15_3913 0.71 -0.2 4,142,497 - HP15_3913 0.72 +1.8 4,142,503 - HP15_3913 0.72 -0.2 4,142,614 + HP15_3913 0.80 -0.2 4,142,616 + HP15_3913 0.80 -0.9 4,142,817 - +0.4 4,142,818 + -1.5 4,142,831 - +0.9 4,142,843 + -0.3 4,142,888 + -1.2 4,142,910 - -0.3 4,142,910 - +0.7 4,143,099 + HP15_3914 0.14 -2.2 4,143,154 - HP15_3914 0.21 -0.5 4,143,207 - HP15_3914 0.27 -1.9 4,143,234 + HP15_3914 0.30 +2.4 4,143,242 + HP15_3914 0.31 -1.9 4,143,273 + HP15_3914 0.34 +0.2 4,143,281 - HP15_3914 0.35 -0.8 4,143,480 - HP15_3914 0.57 -0.8 4,143,593 - HP15_3914 0.70 -1.8 4,143,627 + HP15_3914 0.74 -1.1 4,143,868 + +0.2 4,143,868 + +0.6 4,143,876 - -0.4 4,143,876 - +0.6 4,143,989 - +1.3 4,144,025 + -0.8 4,144,089 - -1.4 4,144,197 + HP15_3915 0.14 +0.0 4,144,231 - HP15_3915 0.16 -0.7 4,144,238 - HP15_3915 0.17 -0.3 4,144,240 + HP15_3915 0.17 +0.8 4,144,248 - HP15_3915 0.17 +3.0 4,144,248 - HP15_3915 0.17 +1.1 4,144,281 + HP15_3915 0.19 +1.9 4,144,364 + HP15_3915 0.25 +1.7 4,144,504 - HP15_3915 0.33 +0.0 4,144,538 + HP15_3915 0.35 -0.8 4,144,565 + HP15_3915 0.37 +0.4
Or see this region's nucleotide sequence