Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3870 and HP15_3871 are separated by 48 nucleotides HP15_3871 and HP15_3872 are separated by 132 nucleotides
HP15_3870: HP15_3870 - diguanylate cyclase, at 4,096,322 to 4,097,422
_3870
HP15_3871: HP15_3871 - glutamine amidotransferase class-II, at 4,097,471 to 4,098,256
_3871
HP15_3872: HP15_3872 - uncharacterized conserved protein UCP07580, at 4,098,389 to 4,099,294
_3872
Position (kb)
4097
4098
4099 Strain fitness (log2 ratio)
-2
-1
0
1 at 4096.519 kb on - strand, within HP15_3870 at 4096.562 kb on - strand, within HP15_3870 at 4096.568 kb on + strand, within HP15_3870 at 4096.624 kb on - strand, within HP15_3870 at 4096.726 kb on - strand, within HP15_3870 at 4096.782 kb on - strand, within HP15_3870 at 4096.808 kb on - strand, within HP15_3870 at 4096.858 kb on + strand, within HP15_3870 at 4096.879 kb on + strand, within HP15_3870 at 4096.993 kb on + strand, within HP15_3870 at 4097.014 kb on + strand, within HP15_3870 at 4097.021 kb on + strand, within HP15_3870 at 4097.022 kb on - strand, within HP15_3870 at 4097.034 kb on + strand, within HP15_3870 at 4097.042 kb on - strand, within HP15_3870 at 4097.084 kb on - strand, within HP15_3870 at 4097.175 kb on + strand, within HP15_3870 at 4097.183 kb on - strand, within HP15_3870 at 4097.183 kb on - strand, within HP15_3870 at 4097.232 kb on - strand, within HP15_3870 at 4097.290 kb on - strand, within HP15_3870 at 4097.327 kb on + strand at 4097.340 kb on - strand at 4097.351 kb on + strand at 4097.351 kb on + strand at 4097.359 kb on - strand at 4097.361 kb on - strand at 4097.508 kb on - strand at 4097.536 kb on + strand at 4097.566 kb on + strand, within HP15_3871 at 4097.572 kb on + strand, within HP15_3871 at 4097.657 kb on - strand, within HP15_3871 at 4097.660 kb on + strand, within HP15_3871 at 4097.667 kb on - strand, within HP15_3871 at 4097.668 kb on - strand, within HP15_3871 at 4097.668 kb on - strand, within HP15_3871 at 4097.780 kb on - strand, within HP15_3871 at 4097.800 kb on + strand, within HP15_3871 at 4097.862 kb on - strand, within HP15_3871 at 4098.039 kb on + strand, within HP15_3871 at 4098.056 kb on + strand, within HP15_3871 at 4098.063 kb on + strand, within HP15_3871 at 4098.071 kb on + strand, within HP15_3871 at 4098.087 kb on + strand, within HP15_3871 at 4098.222 kb on - strand at 4098.256 kb on + strand at 4098.432 kb on - strand at 4098.614 kb on + strand, within HP15_3872 at 4098.644 kb on + strand, within HP15_3872 at 4098.668 kb on + strand, within HP15_3872 at 4098.679 kb on + strand, within HP15_3872 at 4098.714 kb on + strand, within HP15_3872 at 4098.724 kb on - strand, within HP15_3872 at 4098.734 kb on - strand, within HP15_3872 at 4098.896 kb on - strand, within HP15_3872 at 4098.991 kb on + strand, within HP15_3872 at 4098.991 kb on + strand, within HP15_3872 at 4098.991 kb on + strand, within HP15_3872 at 4099.009 kb on - strand, within HP15_3872 at 4099.081 kb on - strand, within HP15_3872 at 4099.155 kb on - strand, within HP15_3872 at 4099.165 kb on - strand, within HP15_3872
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 4,096,519 - HP15_3870 0.18 -0.4 4,096,562 - HP15_3870 0.22 -0.5 4,096,568 + HP15_3870 0.22 +0.6 4,096,624 - HP15_3870 0.27 +0.1 4,096,726 - HP15_3870 0.37 -1.5 4,096,782 - HP15_3870 0.42 -0.6 4,096,808 - HP15_3870 0.44 -2.2 4,096,858 + HP15_3870 0.49 -0.4 4,096,879 + HP15_3870 0.51 -0.4 4,096,993 + HP15_3870 0.61 -1.5 4,097,014 + HP15_3870 0.63 -1.8 4,097,021 + HP15_3870 0.63 +0.7 4,097,022 - HP15_3870 0.64 +0.6 4,097,034 + HP15_3870 0.65 +0.0 4,097,042 - HP15_3870 0.65 -1.3 4,097,084 - HP15_3870 0.69 +0.4 4,097,175 + HP15_3870 0.77 +0.2 4,097,183 - HP15_3870 0.78 +0.6 4,097,183 - HP15_3870 0.78 -1.2 4,097,232 - HP15_3870 0.83 +0.9 4,097,290 - HP15_3870 0.88 -0.7 4,097,327 + -0.4 4,097,340 - -0.6 4,097,351 + -0.4 4,097,351 + -0.4 4,097,359 - +1.2 4,097,361 - +0.1 4,097,508 - -0.1 4,097,536 + -0.7 4,097,566 + HP15_3871 0.12 +0.1 4,097,572 + HP15_3871 0.13 +1.7 4,097,657 - HP15_3871 0.24 +0.1 4,097,660 + HP15_3871 0.24 -0.6 4,097,667 - HP15_3871 0.25 -1.7 4,097,668 - HP15_3871 0.25 +1.1 4,097,668 - HP15_3871 0.25 -0.6 4,097,780 - HP15_3871 0.39 -1.5 4,097,800 + HP15_3871 0.42 +0.9 4,097,862 - HP15_3871 0.50 -1.5 4,098,039 + HP15_3871 0.72 +0.3 4,098,056 + HP15_3871 0.74 +0.7 4,098,063 + HP15_3871 0.75 -0.5 4,098,071 + HP15_3871 0.76 -1.0 4,098,087 + HP15_3871 0.78 +1.0 4,098,222 - +0.2 4,098,256 + +1.7 4,098,432 - +0.6 4,098,614 + HP15_3872 0.25 -2.1 4,098,644 + HP15_3872 0.28 +1.2 4,098,668 + HP15_3872 0.31 -0.7 4,098,679 + HP15_3872 0.32 -0.1 4,098,714 + HP15_3872 0.36 -0.7 4,098,724 - HP15_3872 0.37 +0.7 4,098,734 - HP15_3872 0.38 +0.1 4,098,896 - HP15_3872 0.56 -0.1 4,098,991 + HP15_3872 0.66 -1.4 4,098,991 + HP15_3872 0.66 +0.7 4,098,991 + HP15_3872 0.66 -0.2 4,099,009 - HP15_3872 0.68 +0.3 4,099,081 - HP15_3872 0.76 +1.0 4,099,155 - HP15_3872 0.85 +0.4 4,099,165 - HP15_3872 0.86 +0.1
Or see this region's nucleotide sequence